PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B00098.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 277aa    MW: 29415.1 Da    PI: 8.6189
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B00098.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74.2e-18115169256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Pahal.B00098.2 115 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 169
                     788899***********************************************98 PP
2HD-ZIP_I/II125.72e-40115204191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+keq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++e +eLr +l
  Pahal.B00098.2 115 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENRRLQRELQELR-AL 204
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.77E-19108172IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-18111174IPR009057Homeodomain-like
PROSITE profilePS5007117.232111171IPR001356Homeobox domain
SMARTSM003897.8E-16113175IPR001356Homeobox domain
PfamPF000461.9E-15115169IPR001356Homeobox domain
CDDcd000866.56E-15115172No hitNo description
PROSITE patternPS000270146169IPR017970Homeobox, conserved site
SMARTSM003409.3E-24171214IPR003106Leucine zipper, homeobox-associated
PfamPF021833.3E-11171205IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MAQEDVHLDD AGLALGLSLG GGGASDAARR QGTGSRLGRE AARLPPSPRA LEPSLTLSMP  60
DEATATGSGG GGGAAAHSVS SLSVAGVKRE RVEEADGERA SSTARGEDDD DGSTRKKLRL  120
TKEQSALLED RFKEHSTLNP KQKVALAKQL NLRPRQVEVW FQNRRARTKL KQTEVDCEFL  180
KRCCESLTEE NRRLQRELQE LRALKFAAPP GAPPPPAATA PAPAPFYMQL PAATLTLCPS  240
CERLSGPAAA AKADPDRPKA APAHHFFNPF THSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113119TRKKLRL
2163171RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0977881e-150FP097788.1 Phyllostachys edulis cDNA clone: bphylf059k15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797739.10.0homeobox-leucine zipper protein HOX19-like isoform X2
SwissprotA2XE761e-109HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL41e-109HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLA0A2S3ISR20.0A0A2S3ISR2_9POAL; Uncharacterized protein
TrEMBLA0A2T7CFG80.0A0A2T7CFG8_9POAL; Uncharacterized protein
STRINGPavir.J25440.1.p1e-130(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-56homeobox from Arabidopsis thaliana