PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B00146.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 171aa    MW: 19707.1 Da    PI: 8.7618
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B00146.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.51.1e-131190190
            FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                    kf+ +Y+ + GF+vrk++++ksk +g          ke +r ++k++ ++ + +raetrt+C+ ++ + ++k ++ ++v++l+leHnHel 
  Pahal.B00146.1 11 KFWLAYSGQSGFEVRKQYTNKSKIDG----------KESHRGKDKRS-DQVKCPRAETRTDCEVRMGLVNDKeTDGYKVYDLKLEHNHELH 90
                    69********************9999..........66666666666.7789**************98777769***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.5E-91190IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MKFTNPEEGW KFWLAYSGQS GFEVRKQYTN KSKIDGKESH RGKDKRSDQV KCPRAETRTD  60
CEVRMGLVND KETDGYKVYD LKLEHNHELH SPETFHLMVS QRKISKLQAF EIETADDSGI  120
DPKASHELAC RQVGGPLNLG YTLRDHKNYL RGKRQREMAY GEAGSMLQYF *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008646034.11e-105protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2T8KVK92e-84A0A2T8KVK9_9POAL; Uncharacterized protein
STRINGBRADI2G59232.11e-75(Brachypodium distachyon)
STRINGOS10T0571900-001e-80(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-14FAR1-related sequence 5