PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B00148.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 230aa    MW: 24754.3 Da    PI: 8.7774
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B00148.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.6e-161157148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     + +WT+eEd  l + v+ +G+ +W++I++ ++ gR +k+c++rw ++l
   Pahal.B00148.1 11 KSAWTKEEDAALREQVRAHGPQNWAAISAALP-GRNPKSCRLRWCQHL 57
                     579*****************************.***********9986 PP
2Myb_DNA-binding52.98.5e-1766108347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEde++++++++++++ W+tIa  ++ gR+++ +k+rw+++
   Pahal.B00148.1  66 PFTPEEDEKIACLHRLYPNK-WATIAGFLP-GRSDNAVKNRWNSV 108
                      79******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.55661IPR017930Myb domain
SuperFamilySSF466891.58E-299105IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-19959IPR009057Homeodomain-like
SMARTSM007175.0E-161059IPR001005SANT/Myb domain
PfamPF002492.4E-151157IPR001005SANT/Myb domain
CDDcd001676.10E-151357No hitNo description
SMARTSM007172.8E-1363111IPR001005SANT/Myb domain
PROSITE profilePS5129417.03465113IPR017930Myb domain
PfamPF002494.0E-1566109IPR001005SANT/Myb domain
CDDcd001678.09E-1366109No hitNo description
Gene3DG3DSA:1.10.10.601.4E-1866109IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MAMPDEAAMK KSAWTKEEDA ALREQVRAHG PQNWAAISAA LPGRNPKSCR LRWCQHLTPV  60
VDAVRPFTPE EDEKIACLHR LYPNKWATIA GFLPGRSDNA VKNRWNSVLG KQPQPQQWAA  120
AAPLRRISDG TLPLFPVASG DVMAFGRSVR VLRRPPPGDA GADLSGACLK LFPLAPGDLV  180
GGNDTSEAGE MDVDRGDDGP TVAELRLWPC TRAASMAAFK AMVQAVRAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A3e-27111122102MYB3
3zqc_D3e-27111122102MYB3
3zqc_G3e-27111122102MYB3
3zqc_J3e-27111122102MYB3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798530.11e-167myb-related protein 308-like
TrEMBLA0A2T8I5P21e-164A0A2T8I5P2_9POAL; Uncharacterized protein
STRINGPavir.Ib00896.1.p1e-138(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49603465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.11e-36myb domain protein 77