PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B00226.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 311aa    MW: 33064 Da    PI: 7.6224
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B00226.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.91.6e-1563112355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV+++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  Pahal.B00226.2  63 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 112
                     9***************999754...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.256126IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-5227IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-5227IPR001471AP2/ERF domain
CDDcd000187.96E-2461122No hitNo description
SuperFamilySSF541714.84E-1861121IPR016177DNA-binding domain
SMARTSM003802.9E-3362126IPR001471AP2/ERF domain
PROSITE profilePS5103219.1962120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-1862120IPR001471AP2/ERF domain
PfamPF008473.4E-1063112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEEKAARAYD LAALKYWGPS THINFPLEDY QEELEEMKNM TRQEYVAHLR RKSSGFSRGA  60
SMYRGVTRHH QHGRWQARIG RVSGNKDLYL GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD  120
ITRYDVDKIM ASNTLLPGEL ARRKKDDEAP VADGGVTAAA LVQAGNGSAT AADTWKVAAA  180
LAAAPRAAEH GHVHHQHDVL SGAEAFSVLH HLVTAADGGG HHSAGGAQHM PMSSASSLVT  240
SLGNSREASP DRGGGLSMLF SKPPAQQQQA ASKPMSPLMP LGSWASPASA RAAASVSIAH  300
MPVFAAWTDA *
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0882630.0BT088263.1 Zea mays full-length cDNA clone ZM_BFc0105N21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803955.10.0AP2-like ethylene-responsive transcription factor CRL5
SwissprotQ84Z021e-139CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2S3GVP30.0A0A2S3GVP3_9POAL; Uncharacterized protein
TrEMBLA0A2T7EKG20.0A0A2T7EKG2_9POAL; Uncharacterized protein
STRINGPavir.Ba03911.1.p1e-168(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.14e-86AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]