PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B00232.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 350aa    MW: 37946.8 Da    PI: 6.4328
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B00232.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox308.8e-102753102055
                     HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Pahal.B00232.1 275 YKWPYPSETEKIALAESTGLDQKQINNWFINQRKRH 310
                     4679*****************************885 PP
2ELK37.84e-13230251122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK qLl+KYsgyL+sL+qEFs
  Pahal.B00232.1 230 ELKYQLLKKYSGYLSSLRQEFS 251
                     9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.8E-2284128IPR005540KNOX1
PfamPF037903.5E-2285126IPR005540KNOX1
SMARTSM012561.8E-30131182IPR005541KNOX2
PfamPF037912.7E-24137180IPR005541KNOX2
PROSITE profilePS5121311.627230250IPR005539ELK domain
PfamPF037894.2E-10230251IPR005539ELK domain
SMARTSM011881.2E-7230251IPR005539ELK domain
PROSITE profilePS5007112.892250313IPR001356Homeobox domain
SuperFamilySSF466891.24E-19251324IPR009057Homeodomain-like
SMARTSM003894.4E-13252317IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.6E-28255314IPR009057Homeodomain-like
CDDcd000864.47E-13262314No hitNo description
PfamPF059209.7E-17270309IPR008422Homeobox KN domain
PROSITE patternPS000270288311IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDHGFGNLGA GGSSSGGSNS AKAAASSSSF LQLPLSTAAA AGAAPAGVAY YGAPLALLHQ  60
AAGPSSSQSP YGRHAAEISS AEAEAIKAKI VAHPQYSALL AAYLDCQKVG APPDVLERLT  120
AMAAKLDARP PGRHEPRDPE LDQFMEAYCN MLVKYREELT RPIDEAMEFL KRVEAQLESI  180
AGAAVGGSSA ARLSLADGKS EGVGSSEDDM DPSGLENEPP EIDPRAEDKE LKYQLLKKYS  240
GYLSSLRQEF SKKKKKGKLP KEARQKLLHW WELHYKWPYP SETEKIALAE STGLDQKQIN  300
NWFINQRKRH WKPSEDMPFV MMEGFHPQNA AALYMDGPFM ADGMYRLGS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0333610.0BT033361.1 Zea mays full-length cDNA clone ZM_BFb0146E21 mRNA, complete cds.
GenBankKJ7275690.0KJ727569.1 Zea mays clone pUT5429 HB transcription factor (HB132) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803053.10.0homeobox protein rough sheath 1-like
SwissprotO650341e-176KNOSC_ORYSI; Homeobox protein knotted-1-like 12
SwissprotO804161e-176KNOSC_ORYSJ; Homeobox protein knotted-1-like 12
TrEMBLA0A2S3GVC70.0A0A2S3GVC7_9POAL; Uncharacterized protein
STRINGPavir.Bb00225.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-100KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y, et al.
    Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
    EMBO J., 1999. 18(4): p. 992-1002
    [PMID:10022841]
  2. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  3. Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
    Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
    Plant Cell, 2001. 13(9): p. 2085-98
    [PMID:11549765]
  4. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  5. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  6. Yin H, et al.
    SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
    Planta, 2013. 237(1): p. 15-27
    [PMID:22956125]