PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B00264.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 347aa MW: 38682.1 Da PI: 6.1384

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B00264.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.3	9e-51	47	178	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 + pGfrFhPtdeelv++yL++kv+g++l++ e+ik++diyk++PwdLp +++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++s Pahal.B00264.1 47 MLPGFRFHPTDEELVTFYLRRKVAGRRLSI-EIIKDFDIYKHDPWDLPkSSTISGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIYS 140 579*************************.89***********445556899********************************** PP NAM 95 k....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + g +glkk+Lvfy+g+a kg+kt+W+mhe+rl Pahal.B00264.1 141 AaagrAGDPIGLKKSLVFYRGSAGKGTKTEWMMHEFRL 178 987777777*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-55	46	205	IPR003441	NAC domain
PROSITE profile	PS51005	55.786	47	205	IPR003441	NAC domain
Pfam	PF02365	3.4E-25	49	178	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MPTRSSSAMV QEQHHMAKER SLEMKGSDHG EGAEEVVLVG DEEEEDMLPG FRFHPTDEEL 60 VTFYLRRKVA GRRLSIEIIK DFDIYKHDPW DLPKSSTISG EKEWYFFCLR GRKYRNSIRP 120 NRVTGSGFWK ATGIDRPIYS AAAGRAGDPI GLKKSLVFYR GSAGKGTKTE WMMHEFRLPP 180 RPESPHTSPS EQEAEVWTIC RIFRRSISYK KHPQQQQVAG KVSTAGVAQP DYSSSITGSL 240 ESDTGDEYTN GSLPPPQAPA INSVNDAGYG YSSQQFQGQW NSSALHAAAT APLPSPTTMA 300 AFHHDVLSSS PAAPDDMYYK DGSSWDDIGR MMMELTDDMF CDSRYA*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MPTRSSSAMV QEQHHMAKER SLEMKGSDHG EGAEEVVLVG DEEEEDMLPG FRFHPTDEEL  60
VTFYLRRKVA GRRLSIEIIK DFDIYKHDPW DLPKSSTISG EKEWYFFCLR GRKYRNSIRP  120
NRVTGSGFWK ATGIDRPIYS AAAGRAGDPI GLKKSLVFYR GSAGKGTKTE WMMHEFRLPP  180
RPESPHTSPS EQEAEVWTIC RIFRRSISYK KHPQQQQVAG KVSTAGVAQP DYSSSITGSL  240
ESDTGDEYTN GSLPPPQAPA INSVNDAGYG YSSQQFQGQW NSSALHAAAT APLPSPTTMA  300
AFHHDVLSSS PAAPDDMYYK DGSSWDDIGR MMMELTDDMF CDSRYA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-49	49	211	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-49	49	211	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-49	49	211	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-49	49	211	19	171	NO APICAL MERISTEM PROTEIN
4dul_A	4e-49	49	211	19	171	NAC domain-containing protein 19
4dul_B	4e-49	49	211	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025803594.1	0.0	transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	3e-79	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A2S3GVN7	0.0	A0A2S3GVN7_9POAL; Uncharacterized protein
STRING	Si030477m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1191	38	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	4e-79	NAC domain containing protein 42

Link Out ? help Back to Top
Phytozome	Pahal.B00264.1

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]