PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B00341.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YA

Protein Properties

Length: 262aa MW: 27686 Da PI: 10.0764

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B00341.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	91.4	1.2e-28	130	186	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQ+++Il+RR +Ra+++++ + ++srkpylheSRh hAlrR+RgsgGrF Pahal.B00341.1 130 EEPVYVNAKQFNGILRRRLARARAARDLRA-SRSRKPYLHESRHLHALRRARGSGGRF 186 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.0E-31	128	189	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	34.823	129	189	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.1E-27	131	186	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	7.5E-21	132	154	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	7.5E-21	163	186	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MRSAAAMGFQ EHGLAFQVIT DGRGHGGGAT AAPWWAAAAA QGFAAKFPIS SGDSDPPQDL 60 KYHEPSAAAI AAYPELHKYQ HGPFDLALGQ STVWSNNAGA GQGQSYGLYS PYGAQAMHGR 120 VLLLPAIAAE EPVYVNAKQF NGILRRRLAR ARAARDLRAS RSRKPYLHES RHLHALRRAR 180 GSGGRFLNTR SLAAGDPPPP FASTPLGGSE PAEDNASKAA RLHPVQDRQD VFLSSLTNMA 240 GDGEARWAGA APRGCCDLLK A*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_A	1e-17	130	188	2	61	HAPB protein
4g92_A	1e-17	130	188	2	61	HAPB protein
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU968217	5e-72	EU968217.1 Zea mays clone 316709 nuclear transcription factor Y subunit A-10 mRNA, complete cds.
GenBank	EU975023	5e-72	EU975023.1 Zea mays clone 465284 nuclear transcription factor Y subunit A-10 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799912.1	0.0	nuclear transcription factor Y subunit A-10-like
TrEMBL	A0A2S3GW35	0.0	A0A2S3GW35_9POAL; Uncharacterized protein
STRING	Pavir.Bb00319.1.p	1e-129	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14663	21	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.3	2e-22	nuclear factor Y, subunit A10

Link Out ? help Back to Top
Phytozome	Pahal.B00341.1