PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B00355.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

YABBY

Protein Properties

Length: 129aa MW: 14576.3 Da PI: 9.7574

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B00355.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	28.5	4.9e-09	2	24	2	24
YABBY 2 dvfssseqvCyvqCnfCntilav 24 +++++se+vCyv+Cn+Cntil+v Pahal.B00355.2 2 STQFASEHVCYVNCNYCNTILVV 24 67899****************98 PP
2	YABBY	130.7	1.9e-40	27	118	74	170
YABBY 74 elkvee.enlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167 ++++++ +n+ s++ +++ + +++s++++s+n+ p+vpp +rPPekrqrvPsaynrfikeeiqrik+snP+ishreafsaaaknWah+P++h Pahal.B00355.2 27 NRGFHQyNNFGSYEPASR-NLRTQSMYQMSNNQ----PQVPP-MRPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLH 115 555444133444444433.34445555666665....44555.8*************************************************** PP YABBY 168 fgl 170 fgl Pahal.B00355.2 116 FGL 118 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.7E-37	49	118	IPR006780	YABBY protein
SuperFamily	SSF47095	8.38E-9	62	112	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	5.6E-6	64	112	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MSTQFASEHV CYVNCNYCNT ILVVVQNRGF HQYNNFGSYE PASRNLRTQS MYQMSNNQPQ 60 VPPMRPPEKR QRVPSAYNRF IKEEIQRIKT SNPEISHREA FSAAAKNWAH LPRLHFGLSV 120 ADGGGGSS*

Functional Description ? help Back to Top
Source	Description
UniProt	May play a role in floral meristem development and maintenance of stamens, rather than in determining polarity in floral organs. {ECO:0000269\|PubMed:15604733, ECO:0000269\|PubMed:17369428}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU963149	1e-101	EU963149.1 Zea mays clone 258350 protein YABBY mRNA, complete cds.
GenBank	EU970658	1e-101	EU970658.1 Zea mays clone 348580 protein YABBY mRNA, complete cds.
GenBank	KJ727990	1e-101	KJ727990.1 Zea mays clone pUT6110 C2C2-YABBY transcription factor (YAB3) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802461.1	1e-84	protein YABBY 1-like
Swissprot	Q7XIM7	4e-63	YAB1_ORYSJ; Protein YABBY 1
TrEMBL	A0A2S3GW41	1e-91	A0A2S3GW41_9POAL; Uncharacterized protein
STRING	Pavir.Ba03779.1.p	4e-82	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-41	YABBY family protein

Link Out ? help Back to Top
Phytozome	Pahal.B00355.2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Ohmori Y,Abiko M,Horibata A,Hirano HY A transposon, Ping, is integrated into intron 4 of the DROOPING LEAF gene of rice, weakly reducing its expression and causing a mild drooping leaf phenotype. Plant Cell Physiol., 2008. 49(8): p. 1176-84 [PMID:18593744] Ohmori Y,Toriba T,Nakamura H,Ichikawa H,Hirano HY Temporal and spatial regulation of DROOPING LEAF gene expression that promotes midrib formation in rice. Plant J., 2011. 65(1): p. 77-86 [PMID:21175891] Li H, et al. Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate. Plant Cell, 2011. 23(7): p. 2536-52 [PMID:21784949] Tanaka W, et al. The YABBY gene TONGARI-BOUSHI1 is involved in lateral organ development and maintenance of meristem organization in the rice spikelet. Plant Cell, 2012. 24(1): p. 80-95 [PMID:22286138] Yang C,Ma Y,Li J The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway. J. Exp. Bot., 2016. 67(18): p. 5545-5556 [PMID:27578842]