PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B00412.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 68aa MW: 7977.86 Da PI: 10.0732

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B00412.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	41.6	4.1e-13	11	62	1	53
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr 53 +fYn+YA+ GFs+ +s+s++ k++ +i +rtf+Cs+ g r +++++ e+++ Pahal.B00412.1 11 DFYNFYARVKGFSIPRSSSHNVKNTITINNRTFCCSRPGIRGPNTRE-ESSKY 62 6******************************************9998.44333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.0E-10	11	66	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 68 aa Download sequence Send to blast
MKFYAEQEAY DFYNFYARVK GFSIPRSSSH NVKNTITINN RTFCCSRPGI RGPNTREESS 60 KYSRPRSD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028549737.1	4e-15	protein FAR1-RELATED SEQUENCE 7 isoform X3
TrEMBL	A0A194YJR4	6e-24	A0A194YJR4_SORBI; Uncharacterized protein
STRING	Pavir.Hb01264.1.p	3e-33	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	1e-06	far-red elongated hypocotyls 3

Link Out ? help Back to Top
Phytozome	Pahal.B00412.1