PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B00523.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 481aa MW: 53591.9 Da PI: 4.6034

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B00523.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.4	5.8e-07	318	366	2	47
SSS-HHHHHHHHHHH....HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdav....kqlGggtWktIartmgkgRtlkqcksrwqky 47 +rWT +E++++ ++v lG++ W+ ++ ++ +t k+++s+++++ Pahal.B00523.2 318 QRWTDDEEKRFERVVfsksVSLGKNFWDHLPHAFP-SKTSKDLVSYYFNV 366 79***********4444469999******.*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00167	3.74E-6	319	367	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MLFTHEKNAD QFDLLSYGNM RGLDSSGNSE ESNFRNGCKD SSSVSPENFS FPWLPVENCQ 60 SATLNHDKRP HSDVNPCQVA CKRPKQTDHD AWLYSFEEHP FTREAEISAS ALADELVKTR 120 QLDHIPANNG ATTCSVSSGI PCPNREQSVG VENLHLPDWV TSFPGYFEDC GPVAGYNLVD 180 DIDLPVHEHL PRKAVPIGPE HQADIPEWRP RVSVSVPGGS GFCADLGCST ASTSEPVSRG 240 YDCESDKWVR DTIIPISSCS SPADWVGDNK IDCDCSDEGS VRCARQHVIE ARGTLKMSLG 300 QDKFRELGLC EMGEDIAQRW TDDEEKRFER VVFSKSVSLG KNFWDHLPHA FPSKTSKDLV 360 SYYFNVFMLR KRAQQNRSDL LRVDSDDDEL HGDSPVPGQE EEDSAVIPPK HEYFINNSLP 420 IEGNHKEYEG EHIAGPSFHG DEIENAGECR HLPNQMPLYS TAENIAHVYN QNESRASFDG 480 *

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MLFTHEKNAD QFDLLSYGNM RGLDSSGNSE ESNFRNGCKD SSSVSPENFS FPWLPVENCQ  60
SATLNHDKRP HSDVNPCQVA CKRPKQTDHD AWLYSFEEHP FTREAEISAS ALADELVKTR  120
QLDHIPANNG ATTCSVSSGI PCPNREQSVG VENLHLPDWV TSFPGYFEDC GPVAGYNLVD  180
DIDLPVHEHL PRKAVPIGPE HQADIPEWRP RVSVSVPGGS GFCADLGCST ASTSEPVSRG  240
YDCESDKWVR DTIIPISSCS SPADWVGDNK IDCDCSDEGS VRCARQHVIE ARGTLKMSLG  300
QDKFRELGLC EMGEDIAQRW TDDEEKRFER VVFSKSVSLG KNFWDHLPHA FPSKTSKDLV  360
SYYFNVFMLR KRAQQNRSDL LRVDSDDDEL HGDSPVPGQE EEDSAVIPPK HEYFINNSLP  420
IEGNHKEYEG EHIAGPSFHG DEIENAGECR HLPNQMPLYS TAENIAHVYN QNESRASFDG  480
*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795535.1	0.0	uncharacterized protein LOC112875779
TrEMBL	A0A2S3IPN1	0.0	A0A2S3IPN1_9POAL; Uncharacterized protein
STRING	Pavir.Ia03027.1.p	0.0	(Panicum virgatum)

Link Out ? help Back to Top
Phytozome	Pahal.B00523.2