PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B00666.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 141aa MW: 16037.9 Da PI: 10.5102

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B00666.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.4	1.7e-15	74	134	39	99
EETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 39 edesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 g++W+ ++ + +++++ +l +GW +F+++ngL++gD+++F l++ +e +++v+++++ Pahal.B00666.1 74 LECMGKTWKTQMVIHNGRRW-FLNGGWAKFARDNGLRVGDICLFDLKKYpRELTMNVHIISR 134 44479*****77777766.6999******************999******9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.9E-21	29	134	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.94E-18	30	133	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.90E-16	35	133	No hit	No description
SMART	SM01019	1.6E-4	37	135	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.8E-13	59	134	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.956	78	135	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
LWSPPLYIVP CRNYLSKSQK KIVEERVRAI QSKVPICVAV MKNNNVGDAQ KWMLELGVRY 60 AAVHLPASGQ AVALECMGKT WKTQMVIHNG RRWFLNGGWA KFARDNGLRV GDICLFDLKK 120 YPRELTMNVH IISREQLSLK *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797620.1	1e-90	B3 domain-containing protein Os03g0619800-like isoform X3
Swissprot	Q6AV22	7e-40	Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBL	A0A2S3IK44	3e-91	A0A2S3IK44_9POAL; Uncharacterized protein
TrEMBL	A0A2S3IK60	4e-91	A0A2S3IK60_9POAL; Uncharacterized protein
STRING	Pavir.Ib02116.1.p	2e-95	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP585	31	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31640.1	1e-06	B3 family protein

Link Out ? help Back to Top
Phytozome	Pahal.B00666.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]