PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B00704.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CAMTA
Protein Properties Length: 1023aa    MW: 114337 Da    PI: 6.5775
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B00704.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.12.7e-56211373118
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e +krwl+++ei++iL n++ +++++e+++rp sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLK g+++vl+cyYah+een++fqr
  Pahal.B00704.1  21 QEaQKRWLRPTEICEILSNYKLFSIAAEPPNRPMSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKAGSIDVLHCYYAHGEENENFQR 115
                     5559******************************************************************************************* PP

            CG-1  97 rcywlLeeelekivlvhylevk 118
                     r+ywlLee++++ivlvhylevk
  Pahal.B00704.1 116 RTYWLLEEDFTHIVLVHYLEVK 137
                     *******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.57116142IPR005559CG-1 DNA-binding domain
SMARTSM010767.5E-7819137IPR005559CG-1 DNA-binding domain
PfamPF038598.9E-5022136IPR005559CG-1 DNA-binding domain
CDDcd001020.00422443531No hitNo description
Gene3DG3DSA:2.60.40.103.7E-9443532IPR013783Immunoglobulin-like fold
PfamPF018331.7E-6444527IPR002909IPT domain
SuperFamilySSF812967.62E-17444530IPR014756Immunoglobulin E-set
SuperFamilySSF484032.18E-15622737IPR020683Ankyrin repeat-containing domain
CDDcd002041.10E-11624735No hitNo description
Gene3DG3DSA:1.25.40.201.7E-15635739IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.741643737IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.805676708IPR002110Ankyrin repeat
SuperFamilySSF525401.43E-7842896IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.045845867IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.791846875IPR000048IQ motif, EF-hand binding site
PfamPF006120.0055847866IPR000048IQ motif, EF-hand binding site
SMARTSM000150.05868890IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.212869893IPR000048IQ motif, EF-hand binding site
PfamPF006120.0015871890IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1023 aa     Download sequence    Send to blast
MAENRRFVLP GQPPDFSQIL QEAQKRWLRP TEICEILSNY KLFSIAAEPP NRPMSGSLFL  60
FDRKVLRYFR KDGHNWRKKK DGKTVKEAHE KLKAGSIDVL HCYYAHGEEN ENFQRRTYWL  120
LEEDFTHIVL VHYLEVKGCK QSFSRVKEEF MQLSNVDSPS CSNSITSQNQ MGPQTMEAAE  180
SPISRQISDY EDTESADNFR ASSRYHPLAE MQQPVDGFIT ENMFYASSST VGSRQGYHGE  240
MLPTTANVDN HSLSHHDIAR MFGDSNTGLS TVSRILFDSV PFNEPFTDYS TGFTEPTLHS  300
SFACLEANNM DNSSRLQTFT SEALYTNHLS KEEADALSFT GIPSSEVNGS RCTEGSIKHP  360
LLKQSSLDLM TIEPTGLKKH DSFSRWMSKE LEEVVDLGIK STSDAFWSNI ETVKVPDGSN  420
VLTNEQLDAY VVSPSLSQDQ LFSILNVSPS CVYIGTNTKV SVTGTFLVNK EHVENRKWSC  480
MFGNVEVPAE VLTDGTLRCY APANQLGRVP FYVTCSNRVA CSEVREFEYR DPETQYMEPS  540
PSQANGVNEM HLHIRLEKLL TLGPDDHQVH VLSSGNEKYE LINAISSLML DVKWSDQESP  600
SANKVVSTAR DQSLKKLVKE KLHHWLICKI NDDGKGPNVL CKEGQGVIHL VAALGYDWAI  660
RPIIVAGVNV NFRDAHGWTA LHWAASLGRE RTIGVLITNG AAAGALTDPT SEFPSGRSPA  720
DLASVNGHKG IAGFLAESAL TSHLSALTIR ESKDSTAEVC GLPAVEDLTG INSTQLAGED  780
SHAESLEGSL SAVRKSTQAA ARIFQAFRVE SFHRKKVVEY GDGDCGLSDE RTLSLVSVKP  840
GHDTHLHSAA VRIQNKFRGW KGRKEFMIIR QRIVKLQAHV RGHQVRKSYR KVVWSVGIVE  900
KVILRWRRKR PGLRGFRPEK QLEGPSQIQP AKAEDEYDFL HDGRRQAEAS LQRALARVHS  960
MSQYPEAREQ YHRLTTCVAE MKQSRMMQDE MLNDASGGDG NDFMAGLEDL ICMDDAAMPA  1020
IW*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570630.0EU957063.1 Zea mays clone 1581734 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793079.10.0calmodulin-binding transcription activator 3-like isoform X1
TrEMBLA0A2S3IQ520.0A0A2S3IQ52_9POAL; Uncharacterized protein
STRINGPavir.Ia03131.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains