PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B00752.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 146aa MW: 15921 Da PI: 6.9465

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B00752.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	37	57	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C++ F ++ L H++ H Pahal.B00752.1 37 CTYCDRKFYTSQALGGHQNAH 57 ******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.43E-9	23	81	No hit	No description
PROSITE profile	PS50157	10.949	35	62	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	37	57	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MKTPEQELDL ELSLILHRPP SPPELEPVEE PVGFFLCTYC DRKFYTSQAL GGHQNAHKYE 60 RALAKRRRKI AAAMRANQAI ERGAGQVDRP GGTGARVVGV AGAEPEAAER ARPLVAQQSA 120 PVPWHSADLQ SDMGRADELD LTLRL*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU960065	3e-41	EU960065.1 Zea mays clone 221533 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792063.1	1e-103	uncharacterized protein LOC112873284
TrEMBL	A0A2S3IQ86	1e-101	A0A2S3IQ86_9POAL; Uncharacterized protein
STRING	Pavir.Ib01788.1.p	1e-74	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP183	36	274

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14010.1	1e-10	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Pahal.B00752.1