PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B00791.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 428aa    MW: 46689.5 Da    PI: 9.9464
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B00791.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.12.5e-171415314127
             NAM  14 lvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlskkgelvglkktLv 107
                     lvv+yL+++++++ l+l  ++ + +i++++P +L +k+++  ++ +fF++r++k++ g+r+nr +  +g W+atg+++ + + +g+lvg  +tLv
  Pahal.B00791.1  14 LVVRYLRPRLANQWLPL-PIFFDEHILHYHPGRLVEKYRNYGEDRWFFVRRERKHEGGNRPNRaTLGNGHWNATGSQRLIRA-GGALVGRVRTLV 106
                     99************999.6788889*********978888788889*****************44569************99.999999999999 PP

             NAM 108 fy...........................kgrapkgektdWvmheyr 127
                                                   g+a+kg kt+W+m ey+
  Pahal.B00791.1 107 VGtygqgfppipmfyeasrskkqqknreeAGKASKGAKTEWTMYEYE 153
                     7545676666666667777666655555449***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.2811183IPR003441NAC domain
PfamPF023651.3E-613153IPR003441NAC domain
SuperFamilySSF1019417.19E-2214159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MGPTGGSPLA SVTLVVRYLR PRLANQWLPL PIFFDEHILH YHPGRLVEKY RNYGEDRWFF  60
VRRERKHEGG NRPNRATLGN GHWNATGSQR LIRAGGALVG RVRTLVVGTY GQGFPPIPMF  120
YEASRSKKQQ KNREEAGKAS KGAKTEWTMY EYESLAPEEE FVATCVDGNA RMDAIVPCTI  180
QKKKQKKQQH GEEAGKIGET KKRTINRKAK GKGQEAGGRK RRKRTAEPQE EGHARRTPTE  240
TAALVREQPS TGAAHFTVDP DDDMDASYFS FSNTSPPALP PPPPQETMMA AAAGGDNYIN  300
VHPSTAAMTA ILAPLGGGNY CNIMAPNITW MDLHFASATE PPPPLEDLPT ASWIHAPLRR  360
HNEAKIAPSV SVHPNGFGPG LSSSSYGFAG GDTHRLSTGT GHHDLSRPSM PSHPSYGVGS  420
AQGSANSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-151418930171NO APICAL MERISTEM PROTEIN
1ut4_B6e-151418930171NO APICAL MERISTEM PROTEIN
1ut7_A6e-151418930171NO APICAL MERISTEM PROTEIN
1ut7_B6e-151418930171NO APICAL MERISTEM PROTEIN
3swm_A8e-151418933174NAC domain-containing protein 19
3swm_B8e-151418933174NAC domain-containing protein 19
3swm_C8e-151418933174NAC domain-containing protein 19
3swm_D8e-151418933174NAC domain-containing protein 19
3swp_A8e-151418933174NAC domain-containing protein 19
3swp_B8e-151418933174NAC domain-containing protein 19
3swp_C8e-151418933174NAC domain-containing protein 19
3swp_D8e-151418933174NAC domain-containing protein 19
4dul_A6e-151418930171NAC domain-containing protein 19
4dul_B6e-151418930171NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200222KKRTINRKAKGKGQEAGGRKRRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432497e-88AC243249.1 Panicum virgatum clone PV_ABa094-D05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6SEL80.0A0A3L6SEL8_PANMI; Uncharacterized protein
STRINGPavir.Ia03295.1.p1e-143(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP158671313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-17NAC-like, activated by AP3/PI