PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B01012.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 225aa    MW: 24207.8 Da    PI: 9.7552
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B01012.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11142189455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+sLq
  Pahal.B01012.2 142 SHSLAERARREKISERMKVLQDLVPGC----NKVIGKASVLDEIINYIQSLQ 189
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.81E-10136193No hitNo description
SuperFamilySSF474591.57E-18136206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.406138188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-19138208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-9142189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-12144194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDPASSSVAA ELWRPPHHYL ASGPHHEASS VVTTADRGNG GHSGGGSSRR RPRRDTPAEE  60
EPSKFASTSG AAAGSGSGGQ DSADPEAKRL KQMTSSKSND KIRTEAETNS GNATVEKKHA  120
PPEPPKQDYI HVRARRGQAT DSHSLAERAR REKISERMKV LQDLVPGCNK VIGKASVLDE  180
IINYIQSLQR QVEFLSMKLE AVNAHMNNAT ASFPSKDISL FMNN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9457061e-137EU945706.1 Zea mays clone 282984 mRNA sequence.
GenBankKJ7277451e-137KJ727745.1 Zea mays clone pUT5686 bHLH transcription factor (bHLH73) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803018.11e-166transcription factor BHLH094-like
SwissprotQ69WS33e-87BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A2S3GWD11e-165A0A2S3GWD1_9POAL; Uncharacterized protein
STRINGPavir.Bb00642.1.p1e-111(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.22e-55BIG PETAL P