PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B01023.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 313aa    MW: 33138.1 Da    PI: 5.8624
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B01023.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-17166215456
             AP2   4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      GVr ++ +g+++AeIrd + ng   r+++g+f+t+e Aa a+++a+ +++g+
  Pahal.B01023.1 166 IGVRKRP-WGKYAAEIRDSTRNG--ERVWIGTFDTPEAAALAYDQAAYSMRGA 215
                     5******.**********44465..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.995164222IPR001471AP2/ERF domain
PRINTSPR003673.1E-7165176IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-21166224IPR016177DNA-binding domain
PfamPF008472.5E-12166214IPR001471AP2/ERF domain
CDDcd000182.69E-14167223No hitNo description
Gene3DG3DSA:3.30.730.101.7E-27167223IPR001471AP2/ERF domain
SMARTSM003801.7E-29167228IPR001471AP2/ERF domain
PRINTSPR003673.1E-7188204IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEPQFSSSYY YGRGAATAYA HCDSHYSLQQ HYDGGAMDAS AGFQQFSAYD PHTYSGDYYH  60
SSSSAASWSS SSSGAAPSNH HQMQQLHFGG GMDDEYYSYQ VDGMGVADMD QFGALVGATS  120
ISTTTSSNSS SASSAVARPG AADGSSSCGY FLPQADHQAA DDTPLIGVRK RPWGKYAAEI  180
RDSTRNGERV WIGTFDTPEA AALAYDQAAY SMRGAAAVLN FPVEHVQESL RALGLTAAGA  240
GDSPVMALKR RHCIRKRLPK SKKAAAAGKE QTTAPSTHGH AKRNQAAPDA CVLELEDLGA  300
DYLEELLALS DQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-261672251775Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278831e-110KJ727883.1 Zea mays clone pUT5976 AP2-EREBP transcription factor (EREB166) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801315.10.0ethylene-responsive transcription factor 2-like
TrEMBLA0A2S3GWC00.0A0A2S3GWC0_9POAL; Uncharacterized protein
STRINGSi033089m1e-133(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.19e-33ethylene response factor 1