PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B01024.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 329aa    MW: 34930 Da    PI: 6.6736
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B01024.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-17183232456
             AP2   4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      GVr ++ +g+++AeIrd + ng   r+++g+f+t+e Aa a+++a+ +++g+
  Pahal.B01024.1 183 IGVRKRP-WGKYAAEIRDSTRNG--ERVWIGTFDTPEAAALAYDQAAYSMRGA 232
                     6******.**********44465..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.995181239IPR001471AP2/ERF domain
PRINTSPR003673.3E-7182193IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-21182241IPR016177DNA-binding domain
PfamPF008472.2E-12183231IPR001471AP2/ERF domain
SMARTSM003801.4E-29184245IPR001471AP2/ERF domain
CDDcd000182.41E-14184240No hitNo description
Gene3DG3DSA:3.30.730.102.0E-27184240IPR001471AP2/ERF domain
PRINTSPR003673.3E-7205221IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEPNFSICYN GHTVFAAYAH ERRQPLEHVE TLYSLPAAAS YVDGRIDTTY SDTSSAAVFT  60
YAGGYYHHSS TATLAGSSSG DPPSHQLQQL HSGGGIDQFY SHRQDGIGIG MVDMDQFSAL  120
MGAASISTSS SSGAPATYHT PAACWPQPHG VVVPPPSHAL PAVMQPAMVN GSAAEAEAPP  180
PLIGVRKRPW GKYAAEIRDS TRNGERVWIG TFDTPEAAAL AYDQAAYSMR GAAAVLNFPV  240
ERVQESLHAL GLTGGSAAGD SLVLALKRRH CIRKRCPKNK QKAAAGREQT AARTIHGHGK  300
QKQEASCVLE LEDLGADYLE ELLALSDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-261842411774Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278836e-97KJ727883.1 Zea mays clone pUT5976 AP2-EREBP transcription factor (EREB166) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959050.15e-86ethylene-responsive transcription factor 1
TrEMBLA0A2S3GWP80.0A0A2S3GWP8_9POAL; Uncharacterized protein
STRINGSi032815m1e-107(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-34ethylene response factor 1