PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B01061.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 125aa MW: 13484.9 Da PI: 11.8648

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B01061.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.4	3.5e-05	60	105	11	55
HHHHHHHHHHHHHHCTSCCC......TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkas...kapskKlsKaeiLekAveYIksLq 55 +R++ i+ ++e Lr+l+P a+ +++l+ e L +A YI Lq Pahal.B01061.1 60 KRVAAIRRKMEALRRLVPAAPcgeERADGRLE--ELLLHAAGYILRLQ 105 79*****************5558777777887..99999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.01E-6	59	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-4	60	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MAAHACCDVV ADGATTPAGA AASGRLRLRR PSRALMKKAR KLRKAAGGKR PRPAAASRTK 60 RVAAIRRKME ALRRLVPAAP CGEERADGRL EELLLHAAGY ILRLQMQVRV MQVMVHALND 120 NPED*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	48	52	KRPRP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819435.1	8e-82	uncharacterized protein LOC112895669
TrEMBL	A0A2S3HUU4	2e-80	A0A2S3HUU4_9POAL; Uncharacterized protein
TrEMBL	A0A2T7DMT5	2e-80	A0A2T7DMT5_9POAL; Uncharacterized protein
STRING	Pavir.J31342.1.p	3e-46	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9111	21	26

Link Out ? help Back to Top
Phytozome	Pahal.B01061.1