PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B01216.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 73aa    MW: 8380.96 Da    PI: 11.5856
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B01216.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.95.1e-171549135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C++C++t T+lWR+gp g k+LCn CGl+yr+kgl
  Pahal.B01216.1 15 CTQCHATITSLWRSGPFGRKSLCNVCGLRYRRKGL 49
                    ********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.43E-11849No hitNo description
PROSITE profilePS5011412.374964IPR000679Zinc finger, GATA-type
SMARTSM004011.4E-9961IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-131449IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.70E-91565No hitNo description
PfamPF003207.5E-151549IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MKVVCSLNRN KLKMCTQCHA TITSLWRSGP FGRKSLCNVC GLRYRRKGLE GQELGRKKDR  60
GKNRRYINRV PL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646409.12e-17GATA transcription factor 15
TrEMBLA2YJW24e-16A2YJW2_ORYSI; Uncharacterized protein
STRINGPavir.Ba03329.1.p2e-30(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18253810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.14e-12GATA family protein