PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B01336.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 266aa    MW: 28326.8 Da    PI: 7.2805
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B01336.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-2091140255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +gr++AeIrdp     r +r +lg+f+taeeAa+a++aar++++g
  Pahal.B01336.1  91 RFRGVRRRP-WGRFAAEIRDPQ----RgRRLWLGTFDTAEEAAAAYDAARLRIRG 140
                     69*******.**********92....46*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.2E-1591140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-2791148IPR001471AP2/ERF domain
PROSITE profilePS5103223.02491148IPR001471AP2/ERF domain
SMARTSM003803.5E-3091154IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2092148IPR016177DNA-binding domain
PRINTSPR003675.4E-1092103IPR001471AP2/ERF domain
PRINTSPR003675.4E-10114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDPTSLKEEE MRAAEEVVGE GDLREVARAA AAPRCRVVRI IVHDEDATDS SSSEDEDEDE  60
DEEEEGEAGR SVKRSRTGGG GGEEDAAEGV RFRGVRRRPW GRFAAEIRDP QRGRRLWLGT  120
FDTAEEAAAA YDAARLRIRG PGASTNRPPS ADSDPLPPPA APLPPRPPPP PPQRLPQLPL  180
LPPKKQYLPP PPLLPPKKRL PSPPPVPPET GKQGGAASSA SPPAPPPFSP LPVWALLSGK  240
RKKRSGCGGR VPALRTPAAE EASRA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1987153168ATERF1
3gcc_A4e-1987153168ATERF1
5wx9_A5e-1981152476Ethylene-responsive transcription factor ERF096
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1330071e-41AC133007.4 Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete sequence.
GenBankAC1391721e-41AC139172.2 Oryza sativa chromosome 3 BAC OSJNBb0042K11 genomic sequence, complete sequence.
GenBankAK0666701e-41AK066670.1 Oryza sativa Japonica Group cDNA clone:J013074E02, full insert sequence.
GenBankAK0682521e-41AK068252.1 Oryza sativa Japonica Group cDNA clone:J013145D23, full insert sequence.
GenBankAP0149591e-41AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCU4062131e-41CU406213.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108D05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800803.17e-72ethylene-responsive transcription factor ABI4-like
TrEMBLA0A2T8KNC62e-70A0A2T8KNC6_9POAL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.11e-07cytokinin response factor 3