PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B01402.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 409aa    MW: 41980.2 Da    PI: 7.6813
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B01402.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_175.47.8e-24280342163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv+ L++eN+aL+ el++lkk ++ +++e+
  Pahal.B01402.1 280 ERELKRERRKQSNRESARRSRLRKQQECEELARKVADLTTENSALRAELDNLKKACQDMEAEN 342
                     89*********************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.1E-16275339No hitNo description
PfamPF001703.3E-21280342IPR004827Basic-leucine zipper domain
SMARTSM003383.2E-22280344IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.185282345IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.69E-11283338No hitNo description
CDDcd147029.21E-22285336No hitNo description
PROSITE patternPS000360287302IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MASSSDEQPK PPEPPAAAAG AVVATAAPPQ SHAEWAASLQ AYYAAAGHPY AWPAQHLMAA  60
AAAGAPFGTP VPFPVYHPGA AAAYYAHASM AAGVPYPTAE AAAAAAAAAA AATAAEGKGK  120
GKGGGASPEK GSSGAPSGED ASRSGDSGSE ESSGTRDDDT DHRDSSASKK RKSGNTSAEA  180
FSAGKEWAIK DCCLPGEPSQ AAVVRYAAVE SPYPAAKGRS ASKLPVSAPG RAALPNATPN  240
LNIGMDLWSA SPALAVPAVQ GEANPGLALA RRDSVTQLDE RELKRERRKQ SNRESARRSR  300
LRKQQECEEL ARKVADLTTE NSALRAELDN LKKACQDMEA ENSRLLRGLV KGGVAHSQGP  360
SVTTTLGMSI DPPKVQHHDD EGQLHKNTSN NSNGNYAGTS HKPEANTR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296302RRSRLRK
2296303RRSRLRKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9702431e-180EU970243.1 Zea mays clone 342575 DNA-binding protein EMBP-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804569.10.0DNA-binding protein EMBP-1-like
TrEMBLA0A3L6QQ930.0A0A3L6QQ93_PANMI; DNA-binding protein EMBP-1-like
STRINGPavir.Ba03287.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-21basic region/leucine zipper transcription factor 16