PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B01430.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 1328aa    MW: 149204 Da    PI: 6.6934
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B01430.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY48.61.6e-1512311290359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY    3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                      D ++W K G K++  s+  rsYYrC ++   gC+++k ++ ++++p+++  +Y  eHnhe
  Pahal.B01430.2 1231 DSWKWEKHGEKNIFASNLVRSYYRCLHRnstGCCATKFLQPNDTEPNMLSAMYIYEHNHE 1290
                      99***********************9998889***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.80.10.102.7E-28208372IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520473.92E-28209367No hitNo description
SuperFamilySSF525401.1E-36433658IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003642.3E-12439454No hitNo description
PfamPF009319.3E-30439686IPR002182NB-ARC
PRINTSPR003642.3E-12509523No hitNo description
PRINTSPR003642.3E-12606620No hitNo description
SuperFamilySSF520586.97E-37721921IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.102.1E-21797918IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520586.97E-379511174IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.102.1E-219831049IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.102.1E-2111011173IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003642.3E-1211541170No hitNo description
Gene3DG3DSA:2.20.25.802.9E-1612171292IPR003657WRKY domain
PROSITE profilePS5081118.83112241292IPR003657WRKY domain
SuperFamilySSF1182901.31E-1512261292IPR003657WRKY domain
SMARTSM007741.1E-1312291291IPR003657WRKY domain
PfamPF031066.9E-1412311290IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1328 aa     Download sequence    Send to blast
MEAAKQEELA DMALQRKVSA GFLQGPGSEQ SEVTHEDGSS SGLLLDPPAL DVARASTHGE  60
DDGKENAVSV ASDALQRLQE VYYVMILRML GFRERNHKTT FNFTRSFSNR TTSTCSLGFA  120
SAVDARNLSR SDGRMHGSHG SIVAVLQKCR LLARGVHGVA GRASAEDAKD ARALPVLAFD  180
DLACSGHNKV TRFTTRRIPA QMAEPIYSLP KAMNNLLILD LSGCSGLAQL PASLATLKNL  240
VALDLSCCYS LHTLPASLGT LQNLQILLLS CCHKLKNLPV SLCLLSMLRL FDLSGCSSLE  300
VLPDSFVNFD HLEILNLSDC TKLKKLPRAV GSLQELKYLN LSRCSGLDLD VKYLRSLANL  360
KCLTLSPVTE YQSFPRSFLF IDIYLQWSRW WKRSQFHPQC NPKVGSLHSY RCYELGIIDM  420
LLSDGSDEGD ITSDQIVTSI CIVGESGMGK TELVHRIYND QMILDAFNLR IWVYMCDKRG  480
LLEKIAEFTT CAYCSNAPIS VLEEIVMEEL SGKRLLLVLD DSDVESHYFW GDVRKLLSVC  540
AKGSALIVTT KSSDIAKLIG AMQTFYLSPV SKEECFMIFK EHALGGLDMN SYPQLESIGW  600
KVVEKSGGNP LCIKALSGLL CHSELGYEIY MFVHRTLPAL RLCYDLLPSH LQQCFRFCSL  660
FPKHHIFVKH HIIRLWISQG FVLPEEGNQP EDTGLHYFDE LVCRSFFQRC PFRIDQDDEY  720
VMHELFHDLA TSVSKNECLR SEEPFCSLAE NICHLSLVLS DFKTVALAKE ARNLQSFLVI  780
RGSFPVVRIL PSDDLYMKFG LLRALNLSYT DILELPRSIG NMKHLRLLAL NSTKIKGLPF  840
EIGQVGTLQT LELKDCCHLT DLPENTSNLT KLRHLDVQKE PGNIKVGMPH GIGQLTDLQT  900
LTEFNIGNNL SQCSIAEFKN LNGLRGHVHV TGLENIKTAD DAKEANILGK NFLESLTLEW  960
YYNDEDIDDG LCQEIANNIL QNLQPNSNLQ KLVVQNYPGN LFPLWMQDSY LSKLVSVTLD  1020
NCYGCSKLPY LGDLPSLKSL FIQRMNSIES FEIGSSSLAT EEERPPRYPS LEVLTLWEMY  1080
DLQFWVGTSE GDFPRICRLS ISRCPRLRNL PPLRSLVHLS VHCSSQVPSF SELPSLESLK  1140
IEGFNKIRSI SFPHQLTTLK KLEISDCKEL SSMYAYSLSV SDSRVVRCPK LDLVGSSLED  1200
HHRKKVDGGR NSPTRRSMVL KTATYTDLQV DSWKWEKHGE KNIFASNLVR SYYRCLHRNS  1260
TGCCATKFLQ PNDTEPNMLS AMYIYEHNHE FPNEPNLELS AEPATTRKRK EPDVPSDEHT  1320
SKRQLNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C3e-364321006177758Disease resistance RPP13-like protein 4
6j5t_F3e-364321006177758Disease resistance RPP13-like protein 4
6j5t_G3e-364321006177758Disease resistance RPP13-like protein 4
6j5t_L3e-364321006177758Disease resistance RPP13-like protein 4
6j5t_O3e-364321006177758Disease resistance RPP13-like protein 4
6j5u_A3e-364321006177758Disease resistance RPP13-like protein 4
6j5v_A3e-364321006177758Disease resistance RPP13-like protein 4
6j5w_A3e-364321006177758Disease resistance RPP13-like protein 4
6j6i_C3e-364321006177758Disease resistance RPP13-like protein 4
6j6i_F3e-364321006177758Disease resistance RPP13-like protein 4
6j6i_G3e-364321006177758Disease resistance RPP13-like protein 4
6j6i_L3e-364321006177758Disease resistance RPP13-like protein 4
6j6i_O3e-364321006177758Disease resistance RPP13-like protein 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803327.10.0putative disease resistance protein RGA3 isoform X1
TrEMBLA0A2S3GX410.0A0A2S3GX41_9POAL; Uncharacterized protein
STRINGPavir.J20878.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45260.12e-13Disease resistance protein (TIR-NBS-LRR class)