PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B01699.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 192aa    MW: 20583.4 Da    PI: 9.3174
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B01699.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.12.8e-261977259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                    +D y+WrKYGqK++ g++fprsY+rC  + gCp++k+v+rs+ dp+ ++itY   H+++
  Pahal.B01699.1 19 QDSYTWRKYGQKDILGARFPRSYFRCRRKsGCPARKHVQRSHADPSKLKITYIAAHTCD 77
                    8**************************999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-261279IPR003657WRKY domain
SuperFamilySSF1182901.96E-231779IPR003657WRKY domain
SMARTSM007741.4E-291878IPR003657WRKY domain
PfamPF031068.0E-251977IPR003657WRKY domain
PROSITE profilePS5081122.8482079IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MISRTDGACR MIVLQNGVQD SYTWRKYGQK DILGARFPRS YFRCRRKSGC PARKHVQRSH  60
ADPSKLKITY IAAHTCDDPP RSSSAPHIAP DPVTSSATPQ ENAAARLVPV AAAPSSAQRR  120
TGQPSPLLHP VPDLTAGSVP AALSSMQHDP VPDDTTFTPS MGEKQAELLF ILSPACSQSE  180
LLPAEVSIVS K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-1820751875Disease resistance protein RRS1
5w3x_D3e-1820751875Disease resistance protein RRS1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804239.11e-136probable WRKY transcription factor 54
TrEMBLA0A2T8KNU71e-134A0A2T8KNU7_9POAL; Uncharacterized protein
STRINGPavir.Ba02750.1.p7e-70(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141862125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-21WRKY DNA-binding protein 70