PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B01736.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 187aa    MW: 21107.3 Da    PI: 4.1688
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B01736.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.32.7e-271575158
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58
                    ++Dg+ WrKYGqKe++gs++pr Y+rCt++   gC+++++v+r++ dp+v+ itY g+H++
  Pahal.B01736.1 15 MEDGFIWRKYGQKEINGSKYPRLYFRCTYKddhGCMARRQVQRAEADPSVFLITYFGDHTC 75
                    58***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.1821073IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.6E-261175IPR003657WRKY domain
SuperFamilySSF1182901.31E-241375IPR003657WRKY domain
SMARTSM007746.0E-381577IPR003657WRKY domain
PfamPF031068.1E-261675IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MRGERGTRVE KGRTMEDGFI WRKYGQKEIN GSKYPRLYFR CTYKDDHGCM ARRQVQRAEA  60
DPSVFLITYF GDHTCCRGDD EPLAPFVINF GSSSSDGQPS RSSPWPSCDD DDPVICKSTD  120
LCNSPEEELR SSMDNECEFI DQSTSVPELT SMSSMDGCLD WTLCDGESPF DIGEFIVQDF  180
DYFGLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-221375668OsWRKY45
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7281987e-52KJ728198.1 Zea mays clone pUT6472 WRKY transcription factor (WRKY44) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809070.11e-138probable WRKY transcription factor 70
TrEMBLA0A2S3HB421e-137A0A2S3HB42_9POAL; Uncharacterized protein
STRINGPavir.J41073.1.p1e-121(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-24WRKY DNA-binding protein 70