PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B01773.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 746aa    MW: 81721.1 Da    PI: 5.9968
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B01773.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.83.2e-1768119556
                     SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +f+ +q++eLe++F+ + +p+ + r+eL +k+gL e qV++WFqNrR   k
  Pahal.B01773.1  68 KRFSVQQVQELEAMFQVCTHPDPRVRQELGRKVGLGEWQVRFWFQNRRSSTK 119
                     57**********************************************9876 PP
2START1051.2e-332334573205
                     HHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   3 aeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     ae+a++e+v +a+ ++p+W          ++++ l +f+           + +ea r++ +  +++++lv++l + + qW+e+++     +  ++
  Pahal.B01773.1 233 AERALKEFVMLATKGQPMWIPTIdgeVLGDQEYDLHTFPG--LlglcprgFIVEATRETDMIRGDAMDLVSILTNAA-QWSEMFPdivaYVRSTD 324
                     68999***************99965433466666777733..146889999**************************.*******9988556666 PP

                     EECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
           START  84 vissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwv 167
                     viss        g +qlm  e+ + sp    R++ f+R+++++ + +w++vdvSvd ++  ++     s++  +llpSg+l+e++s+g +kvtwv
  Pahal.B01773.1 325 VISSSstssshdGLIQLMDVEFWVQSPRLLsRNVKFLRFSKKMAERKWAVVDVSVDGNNGDEQqsnGTSYAGYRLLPSGCLMEDMSGGFCKVTWV 419
                     666667779999***************7666*************************999888776677899999********************* PP

                     E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                      h ++ ++++++l++++ +sg+a+ga +w++ lqrqce
  Pahal.B01773.1 420 VHGEYLESTVPELFKQFFRSGQAFGACRWLRSLQRQCE 457
                     *************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.9E-1741119IPR009057Homeodomain-like
SuperFamilySSF466894.14E-1650119IPR009057Homeodomain-like
PROSITE profilePS5007115.14361121IPR001356Homeobox domain
SMARTSM003897.3E-1464125IPR001356Homeobox domain
CDDcd000865.03E-1465119No hitNo description
PfamPF000461.0E-1468119IPR001356Homeobox domain
PROSITE profilePS5084830.803222461IPR002913START domain
CDDcd088753.15E-75226457No hitNo description
SuperFamilySSF559611.65E-15228457No hitNo description
SMARTSM002341.1E-6231458IPR002913START domain
PfamPF018521.1E-26233457IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MENDGQLNNN NVQGLSLITG NHAAWNQPVE YDLDALLGAE DHHVDTNQRS DDEDRCPGSG  60
TPPSKRAKRF SVQQVQELEA MFQVCTHPDP RVRQELGRKV GLGEWQVRFW FQNRRSSTKL  120
KACGNEIRDM QQENTKLRAD NIELKQLVQN PTCFRCRDPA GANQLVSENW RLLNENARLK  180
DELLRAKAYQ DSVIREAERP QSMSSEHQAS AYTHPVPFTY NCRTNKAALV SHAERALKEF  240
VMLATKGQPM WIPTIDGEVL GDQEYDLHTF PGLLGLCPRG FIVEATRETD MIRGDAMDLV  300
SILTNAAQWS EMFPDIVAYV RSTDVISSSS TSSSHDGLIQ LMDVEFWVQS PRLLSRNVKF  360
LRFSKKMAER KWAVVDVSVD GNNGDEQQSN GTSYAGYRLL PSGCLMEDMS GGFCKVTWVV  420
HGEYLESTVP ELFKQFFRSG QAFGACRWLR SLQRQCEYMA VLGSSHIPSS SSSSSAISPL  480
GKRGVLELAR RMKESFYAAV SGPVTIASTN IVDQWCVSSG TGAERVDAAV RMVTWNCAEI  540
MPGEPAITVL SATATVRLPG TPPLRVFEYI CNSQRRGEWD NFVNGGPVEE VSYVPISARL  600
HGNSVCILRP TVVADGSHGT NSNDMLILQQ SSTDASGSLV VYSLVEENVM RGIMGGADSS  660
IFLLPSGFAI LPDGHGKAHY TAVSSSSSAP NNGEGALLTV ASLGMLSSSP SGGPAARSFD  720
DAGEHLCNMI KKIRDAVGAN NVIMA*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684238.10.0homeobox-leucine zipper protein ROC6-like
TrEMBLA0A2T8IBV70.0A0A2T8IBV7_9POAL; Uncharacterized protein
STRINGPavir.Ga02048.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83241742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.11e-112HD-ZIP family protein