PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B01916.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YB

Protein Properties

Length: 173aa MW: 18990.3 Da PI: 4.7256

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B01916.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	49.8	8.1e-16	37	136	6	97
NF-YB 6 rflPianvsrimkkvlPana........kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 ++lP a v r++k l a + kda e + fi ++++ a+d c + kr+tin+dd+l al ++ f +++epl++ l+++r+ Pahal.B01916.1 37 EELPKAIVRRLVKDKLAHVAgggegaevIVNKDAMAAFAESARIFIHYLSATANDMCMESKRQTINADDVLKALDEMEFSEFLEPLRTSLQEFRN 131 578999999999988865431111122158899999**********************************************************9 PP NF-YB 93 legek 97 ++++ Pahal.B01916.1 132 KNADR 136 99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.9E-33	33	170	IPR009072	Histone-fold
Pfam	PF00808	4.3E-9	38	110	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.37E-27	39	168	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MPRKATKEAE PQPAAAAQKE PAPAPAAPAA MTEAEVEELP KAIVRRLVKD KLAHVAGGGE 60 GAEVIVNKDA MAAFAESARI FIHYLSATAN DMCMESKRQT INADDVLKAL DEMEFSEFLE 120 PLRTSLQEFR NKNADRKSEA SKKQKEKRRK LNEESLPQKE NDPADDAEEN DD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	150	RKSEASKKQKEKRRKL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT060559	1e-155	BT060559.1 Zea mays full-length cDNA clone ZM_BFb0015O22 mRNA, complete cds.
GenBank	EU962697	1e-155	EU962697.1 Zea mays clone 244791 DNA polymerase epsilon subunit 3 mRNA, complete cds.
GenBank	EU964046	1e-155	EU964046.1 Zea mays clone 275447 DNA polymerase epsilon subunit 3 mRNA, complete cds.
GenBank	KJ728301	1e-155	KJ728301.1 Zea mays clone pUT6581 CCAAT-DR1 transcription factor (CADR16) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025801207.1	1e-120	DNA polymerase epsilon subunit 3
TrEMBL	A0A2S3GXZ1	1e-119	A0A2S3GXZ1_9POAL; Uncharacterized protein
STRING	Pavir.Bb01701.1.p	4e-88	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10414	37	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	9e-33	nuclear factor Y, subunit B11

Link Out ? help Back to Top
Phytozome	Pahal.B01916.1