PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B02080.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 441aa    MW: 49312.7 Da    PI: 5.1036
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B02080.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.73.9e-17106194399
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     k +++s+v +  +l lpk+f ++h  kke    ++lede+g+    ++ y k++    l++GW++F+ ++++k+gD+vvF+l++ ++f  +v ++
  Pahal.B02080.1 106 KRMLQSHVVRGFWLGLPKDFSQKHLPKKEA--GIVLEDEHGEDHHTTYFYYKQG----LSAGWRGFAIDHDIKVGDVVVFELVKPTKF--KVYIV 192
                     8899********************544444..4***************887877....9**********************9987777..88888 PP

                     -S CS
              B3  98 rk 99 
                     r+
  Pahal.B02080.1 193 RA 194
                     76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-2299195IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.6E-20101195IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-24102193No hitNo description
PROSITE profilePS5086312.139104195IPR003340B3 DNA binding domain
SMARTSM010193.6E-17104195IPR003340B3 DNA binding domain
PfamPF023628.7E-15105194IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MGIDQPIKRK RGRPAGSRHP NTQMEQKMAL VKQRMALLDS GGGDSDKDDD YHPMDDELSV  60
VVAHQPVVIP CGDTDDDGVD DNWESAMSRG QEIQANLPVG HPSSVKRMLQ SHVVRGFWLG  120
LPKDFSQKHL PKKEAGIVLE DEHGEDHHTT YFYYKQGLSA GWRGFAIDHD IKVGDVVVFE  180
LVKPTKFKVY IVRANEFTTT DVDLNLLNLG ASKKEKQSKE ESSEDVITDE DAKVGTPYRE  240
VPPSDGSTTD GIGLDSDIDF DDVTSFSNVN LILDCLATDC GFHDHLRRIY YELCCSRRSL  300
LHKNLLRQLH PTLVAGVIVE TVSIAEGIRA CKAQSSSRED LLNRKKTLES FELLGMNVAF  360
LLKRVNELLA TRSGESSEWQ EKYKELKLER ACAGEKMKVL ELQLSNVKDV MQKVDVEMVE  420
LESSLKKSDE ALQELASAPW *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801418.10.0B3 domain-containing protein Os01g0234100-like
SwissprotQ0JP991e-130Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A2S3GYN10.0A0A2S3GYN1_9POAL; Uncharacterized protein
STRINGPavir.Ba03110.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-33B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]