PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B02226.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 160aa    MW: 17751.8 Da    PI: 8.6467
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B02226.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1461.2e-142975349
                    XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49
                    e++r rrk++NRe+ArrsR+RK++ ++ L+  vk+Le +Nk+L   l
  Pahal.B02226.1 29 ERRRKRRKESNRESARRSRLRKQQHLDDLTSQVKQLEDQNKQLSLAL 75
                    789***************************************98544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-132791IPR004827Basic-leucine zipper domain
PfamPF001705.0E-122974IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.1852992IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.2E-1131104No hitNo description
SuperFamilySSF579591.25E-113181No hitNo description
PROSITE patternPS0003603449IPR004827Basic-leucine zipper domain
CDDcd147022.86E-143880No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MSSGTSSGSS LGTRSSRSED DLDLQAQMER RRKRRKESNR ESARRSRLRK QQHLDDLTSQ  60
VKQLEDQNKQ LSLALSITSQ NLVAVQAQNS VLQTQKMELD SRLSALTEIL CYMNTITCTS  120
ASAPANPAMV NNITSSSSYD LLGASCTWNQ QPIDLYQCF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12935RRRKRRK
22936RRRKRRKE
33136RKRRKE
44349RRSRLRK
54350RRSRLRKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0670531e-102BT067053.1 Zea mays full-length cDNA clone ZM_BFb0173J02 mRNA, complete cds.
GenBankKJ7275581e-102KJ727558.1 Zea mays clone pUT5418 bZIP transcription factor (bZIP9) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802226.11e-112bZIP transcription factor 44-like
TrEMBLA0A2S3GYW71e-110A0A2S3GYW7_9POAL; Uncharacterized protein
STRINGPavir.Ba02250.1.p1e-100(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37403276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.15e-14basic leucine-zipper 44