PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B02527.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 294aa    MW: 31422 Da    PI: 7.2827
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B02527.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.7e-21112161255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  Pahal.B02527.1 112 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 161
                     59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.24E-31111171No hitNo description
SuperFamilySSF541714.9E-23112171IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.9E-33112171IPR001471AP2/ERF domain
PROSITE profilePS5103223.354112169IPR001471AP2/ERF domain
SMARTSM003801.5E-35112175IPR001471AP2/ERF domain
PRINTSPR003672.5E-11113124IPR001471AP2/ERF domain
PfamPF008477.2E-15113161IPR001471AP2/ERF domain
PRINTSPR003672.5E-11135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MAAVIDLSGE ELMRALEPFI RDASAPHESS PLLQHHHPLS PTSPFSFHHA AAYGRYPFAG  60
TEGAGQLSPA QMQYIQARLH LQRQTQSSVL APRAQPMKVS SAAPTPPRPQ KLYRGVRQRH  120
WGKWVAEIRL PRNRTRLWLG TFDTAEEAAL AYDQAAYRLR GDAARLNFPD NAASRGPLHA  180
SVDAKLQQLC QSIAASKKGA KKSAPAAAAA TSSASAPTSN CSSPSSDDAS SSCLESAAES  240
SCPSPSPSAS PESAVPEMQQ LDFSEAPWDE AAGFALTKYP SYEIDWDSLL AAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20111169463ATERF1
3gcc_A2e-20111169463ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278360.0KJ727836.1 Zea mays clone pUT5789 AP2-EREBP transcription factor (EREB109) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801897.10.0ethylene-responsive transcription factor ERF060-like
TrEMBLA0A2S3GZJ00.0A0A2S3GZJ0_9POAL; Uncharacterized protein
TrEMBLA0A2T7ERM80.0A0A2T7ERM8_9POAL; Uncharacterized protein
STRINGSi030684m1e-168(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.14e-41ERF family protein