PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B02579.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GeBP
Protein Properties Length: 234aa    MW: 25261.6 Da    PI: 12.0054
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B02579.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573317.2e-10130224596
          DUF573   5 rlwseeDeivlLqGlidfkaktgk.spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskeh.dqkifelskkiW 96 
                       w  +De ++L  +   ++ +g+ + +    ++ + +       v  +ql++Ki +LK Kfkk v+k a++g + + ++ h  +  +e+s+++W
  Pahal.B02579.1 130 NKWCLDDERLILDTMAFLRMGKGSyNKVPKAPEVLRHLVTLRRRGVDVRQLSDKISQLKVKFKKTVAKaAANGGKLRRRTRHrHKVLYEISQQVW 224
                     56999************999999756666777777777777777899*******************9985555555555555055679******* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.1E-8131224IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MAPTIPPSFP ASRRGKSAAA PTITISSGSD VSVRRTPVIN VSSSSSDDEV TSRPRSAARR  60
ATPPSSVSVV RSPRASSNRG GGGKGDEATS QPRRAARRPS SPASPAVSDR SSDSGGSRSE  120
ATSSQPKKKN KWCLDDERLI LDTMAFLRMG KGSYNKVPKA PEVLRHLVTL RRRGVDVRQL  180
SDKISQLKVK FKKTVAKAAA NGGKLRRRTR HRHKVLYEIS QQVWPHLYQD AGL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2S3I4Y21e-164A0A2S3I4Y2_9POAL; Uncharacterized protein
STRINGPavir.J18151.1.p4e-67(Panicum virgatum)