PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B02607.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GeBP
Protein Properties Length: 254aa    MW: 27193.2 Da    PI: 10.2667
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B02607.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57336.71.1e-1150144497
          DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskkiW 96 
                      r+wse De+ +L Gl  ++a +g+ p    ++a     ++  ++ ++ +++ eK+rrL+ K+ + ++       e   +  ++   ++ls  iW
  Pahal.B02607.1  50 VRVWSEADEVRILEGLAAYAAAHGAPPGRsQLHAAL-EGRGLDKAVFTVTEIYEKVRRLRTKYCNLRAAgGPPVPEGGADDGDEVRRYKLSTAIW 143
                     69**********************977662444444.4566677889999***************9999555667777888888999******** PP

          DUF573  97 g 97 
                     g
  Pahal.B02607.1 144 G 144
                     8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.2E-1650144IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MPPTMSGAPD SPRDGILLLL PAPDAAGEKA HRAASQPGGA RGKKPAAGLV RVWSEADEVR  60
ILEGLAAYAA AHGAPPGRSQ LHAALEGRGL DKAVFTVTEI YEKVRRLRTK YCNLRAAGGP  120
PVPEGGADDG DEVRRYKLST AIWGDQPANV AKKGRSTSAD AMPLKAGGAS TRVRRGFEEL  180
QGLFPSLASE VEKITKDETL VPVLKRAFEL IDDQKAGELN AKVKKQKVRE VKTRMNQDAL  240
RVEVLKMLIR SMD*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0842592e-71BT084259.1 Zea mays full-length cDNA clone ZM_BFb0094M03 mRNA, complete cds.
GenBankJX4285242e-71JX428524.1 Zea mays subsp. mays clone pUT3123 GBP11 GeBP type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825722.10.0uncharacterized protein LOC112901104
TrEMBLA0A2S3I5040.0A0A2S3I504_9POAL; Uncharacterized protein
STRINGPavir.J29943.1.p1e-147(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1462199