PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B02742.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 143aa    MW: 15238.2 Da    PI: 8.6042
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B02742.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.83.8e-05931123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C++ F++   L  H+++H
  Pahal.B02742.1  9 HTCEYCKREFRSAQGLGGHMNVH 31
                    79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.41E-5735No hitNo description
PfamPF139126.8E-6932IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.221936IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
VRRSSSSSHT CEYCKREFRS AQGLGGHMNV HRLDRARLIH HQCSSHRPAA LAPPPNPNPS  60
STVLDLLGSG CPCCRRAHGA AASNGGSAVP AVKLGICRFS SALFATTTQE FEVKNLELRR  120
GACSHGDGTE EILDLELRIG YS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9516555e-49JQ951655.1 Chrysopogon gryllus Ramosa1 (ra1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001143449.19e-47ramosa 1
TrEMBLA0A2T8KQD19e-99A0A2T8KQD1_9POAL; Uncharacterized protein
STRINGGRMZM2G003927_P014e-46(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2224367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.13e-13C2H2 family protein