PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B02747.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

TCP

Protein Properties

Length: 257aa MW: 27680.6 Da PI: 6.5869

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B02747.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	113.8	2.3e-35	96	172	3	80
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaessss 80 ++drhski T++g RdRR+Rls+++a+ fF+Lqd+LGfdk+skt++WLl+q+kpai+ lt+ s+ a + ++s ss Pahal.B02747.1 96 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLTEPSQRCAGGS-DASLSS 172 689***********************************************************966655222.111111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.7E-34	97	171	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	34.922	97	155	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000032	Biological Process	regulation of secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MLPYPNPHHF GVSQEPPHPN PTGFPMLPLA AHLDQHYADH HFFPGHGQFN SETLEAVLRP 60 PRAAPESGPV VTAPQGGKNG AAAAGQGHAR ARKRPFRTDR HSKIRTAQGV RDRRMRLSLD 120 VARDFFALQD RLGFDKASKT VDWLLTQSKP AIDRLTEPSQ RCAGGSDASL SSPTSGAPNG 180 SGNKRGGLVE KAGTRNGRSA FMEHGCELDR LVSAAPALGE YYYAGLSEMM SNNGGEGDDD 240 GEYEEDGDDF LDGMQY*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM578624	1e-169	KM578624.1 Plagiantha tenella isolate TK060-2 retarded palea 1 protein (rep1) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804518.1	0.0	transcription factor TB1-like
TrEMBL	A0A2S3GZP2	0.0	A0A2S3GZP2_9POAL; Uncharacterized protein
STRING	Pavir.Ba01820.1.p	1e-139	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4052	31	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18550.1	2e-27	TCP family protein

Link Out ? help Back to Top
Phytozome	Pahal.B02747.1