PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B02795.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 333aa    MW: 35397.9 Da    PI: 7.1772
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B02795.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.21.9e-29173232159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaed +v++ tYegeHnh+
  Pahal.B02795.1 173 VKDGYQWRKYGQKVTRDNPSPRAYFRCAYApSCPVKKKVQRSAEDSSVLVATYEGEHNHP 232
                     58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-28169234IPR003657WRKY domain
SuperFamilySSF1182901.83E-25170234IPR003657WRKY domain
SMARTSM007741.7E-34173233IPR003657WRKY domain
PfamPF031067.8E-25174232IPR003657WRKY domain
PROSITE profilePS5081126.934175234IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MLLMDSVRRA GCSPVCLDLS VGLSPSPLKM GAGMAAEPGR PDPPAGGCRM ASSMADEQAK  60
TLEAKLTQVS EENRRLTEKI VYLYANQIAR LSPDSTDSTH ASQAASPPPA ASRKRSRDSM  120
DEPPNSGDAD GSGKAEAEAI ESPPSDDFEG SCRRIKVSRV CTRIDPSDTT LTVKDGYQWR  180
KYGQKVTRDN PSPRAYFRCA YAPSCPVKKK VQRSAEDSSV LVATYEGEHN HPCPTRDGEL  240
PSCATRGGSV PCSISINSSG PTITLDLTKN GAGGVRVLEA AGAPDLKKLL CQEIASAEFR  300
TALVEQMASS LTRDSKFTEA LAAAILKQLP DY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-201732341474WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00465DAPTransfer from AT4G31800Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000269|PubMed:16528562}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802072.10.0WRKY transcription factor WRKY76-like
SwissprotQ6IEK51e-128WRK76_ORYSI; WRKY transcription factor WRKY76
TrEMBLA0A2S3GZK60.0A0A2S3GZK6_9POAL; Uncharacterized protein
STRINGPavir.Bb02115.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66603552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-52WRKY DNA-binding protein 40