PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B02875.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GeBP
Protein Properties Length: 223aa    MW: 24467.8 Da    PI: 11.7397
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B02875.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57377.71.9e-24125217292
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                     +++rlws  De+v+L+ l  ++a++g+   +++di ++   +++++s++v+ +ql++K+rrLK+K+k   ++ak+g++p+f ++hd++++el 
  Pahal.B02875.1 125 RPSRLWSLADELVILRVLAAYHARRGVrpGSMHDIAKLQGLIQSELSVQVTPTQLSDKVRRLKQKYKLLASRAKNGRDPDFPTPHDRSVYELG 217
                     679************************666778*********************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.2E-22127216IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MAALQHQMME HRASTTRLRW LPGLRKAGTA ASPSHTPRNP RPRSRSPDAA SVSGSAASDA  60
DSASDDNTSP LPPPRQSRGE DAAINPLSSR PMDPPRRSMV PSFMEPRPKR PRSVAVPSSV  120
EQLKRPSRLW SLADELVILR VLAAYHARRG VRPGSMHDIA KLQGLIQSEL SVQVTPTQLS  180
DKVRRLKQKY KLLASRAKNG RDPDFPTPHD RSVYELGSIS NI*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801578.11e-142probable transcription factor At4g00390
TrEMBLA0A3L6QVV71e-103A0A3L6QVV7_PANMI; Uncharacterized protein
STRINGPavir.Ba02051.1.p1e-93(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.11e-14DNA-binding storekeeper protein-related transcriptional regulator