PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B02899.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 177aa    MW: 18463.5 Da    PI: 6.0102
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B02899.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-0578100123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F ++  L  H++ H
  Pahal.B02899.1  78 FSCTYCDKKFYSSQALGGHQNAH 100
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.23E-666113No hitNo description
PROSITE profilePS5015711.38578105IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MEQHNSTLII PPSRSETTAP PILSPPWGRL QLCPAVLSLH AMDPNGEGGG GGGEGGDLDL  60
NLSLQPSLAP EPEPPGYFSC TYCDKKFYSS QALGGHQNAH KFERSVAKRA RELAAARRPA  120
GHGRERGGAA DEEVGRGKEL GIAAQGSAAS SSTQQIGAAP EARRDLTDEI DLSLKL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9687008e-61EU968700.1 Zea mays clone 323547 zinc finger protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803137.11e-125zinc finger protein 2-like
TrEMBLA0A2S3GZQ31e-124A0A2S3GZQ3_9POAL; Uncharacterized protein
STRINGPavir.Bb02239.1.p3e-89(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.14e-13zinc finger protein 2