PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B02917.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 394aa    MW: 42010.7 Da    PI: 4.6584
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B02917.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-19128177255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+G+r+++ +g+W+AeIrdps+     r++lg++ taeeAa+a++a ++k++g
  Pahal.B02917.1 128 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 177
                     69*******.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.933128185IPR001471AP2/ERF domain
CDDcd000181.17E-31128186No hitNo description
SuperFamilySSF541712.22E-22128187IPR016177DNA-binding domain
SMARTSM003808.5E-38128191IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-32128187IPR001471AP2/ERF domain
PfamPF008476.6E-12129177IPR001471AP2/ERF domain
PRINTSPR003672.6E-11129140IPR001471AP2/ERF domain
PRINTSPR003672.6E-11151167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MCGGAILSGF IRPSGPAAKQ QQQLLQRQPR LVAADLLWPG SGRKGAPAGD DFEADFREFV  60
RGLGEDDDAD TACGGDEVLE VPPPEPATFA FAAAAKAAPP AVDGVMTPKT VQHDEPTATS  120
AKRNRKNQYR GIRQRPWGKW AAEIRDPSKG VRVWLGTYNT AEEAARAYDA EARKIRGKKA  180
KVNFPDEAPD AQKSILKPTT ANLTKLAPLR KACADEAFNN LSNGDNDLFA MFAFSDSKVL  240
VKPAEGASFL PSVKALVPTK RSAENMLSDQ SSNSYGSSDF GWDDETMASD YTSAFAPNNA  300
VPAYANPGYL QGEAPKRMRN NYGVAVPQGN GASNLAQGMS GFDPEMNYLP LPYVESSSDT  360
SMDSLLQNDA PQDGASSGDL WSLDELLMAA GAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-20127185160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-19128185563ATERF1
3gcc_A1e-19128185563ATERF1
5wx9_A3e-191281871474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258265TKRSAENM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800946.10.0ethylene-responsive transcription factor 1-like
TrEMBLA0A2S3GZY00.0A0A2S3GZY0_9POAL; Uncharacterized protein
STRINGPavir.J01991.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112003142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.33e-27related to AP2 2