PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03016.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 347aa    MW: 36621.7 Da    PI: 6.0106
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03016.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox45.51.3e-14171223256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++keq   Lee F+++ +++ +    LAk+l+L  rqV vWFqNrRa+ k
  Pahal.B03016.2 171 RKKLRLSKEQSAFLEESFKEHATLNPK--LALAKQLNLRPRQVEVWFQNRRARTK 223
                     788899*****************9986..69**********************98 PP
2HD-ZIP_I/II116.71.3e-37171259192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kk+rlskeq+++LEesF+e+ +L+p  K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  Pahal.B03016.2 171 RKKLRLSKEQSAFLEESFKEHATLNP--KLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-ALK 259
                     69***********************9..79*********************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.8E-15156223IPR009057Homeodomain-like
SuperFamilySSF466894.6E-15161226IPR009057Homeodomain-like
PROSITE profilePS5007114.058167225IPR001356Homeobox domain
SMARTSM003893.0E-12169229IPR001356Homeobox domain
PfamPF000464.4E-12171223IPR001356Homeobox domain
CDDcd000861.09E-14171226No hitNo description
PROSITE patternPS000270200223IPR017970Homeobox, conserved site
PfamPF021831.3E-10225259IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.4E-24225268IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MELGLSLGET MADAGRDLVL GLGMGAGAMR DEDAETGRRE REARRELEFG AGRYGRSSPE  60
PAVRLTLLPG LMPGLGLPWP PPSEATRHLE ASTRGFDVNR APSLSEAGAA AEDDEEQDDA  120
GAGAAAASSS PNNSAGSFPT DFSAHGQAGP GGGGDRAGSR ASDEDEGGSA RKKLRLSKEQ  180
SAFLEESFKE HATLNPKLAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCET  240
LTEENRRLQK ELAELRALKT VHPFYMHLPA TTLSMCPSCE RVASNSAPAA AAPAQAASSH  300
PSPAGGSIAS APPEQRPSSF AALFSSPLSR PLAAQQQPQP QAPASS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217225RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802237.11e-180homeobox-leucine zipper protein HOX11-like
SwissprotQ67UE21e-141HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA0A2S3GZZ80.0A0A2S3GZZ8_9POAL; Uncharacterized protein
STRINGPavir.J20342.1.p1e-158(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.14e-70homeobox from Arabidopsis thaliana