PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03058.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 520aa    MW: 55850.3 Da    PI: 7.4205
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03058.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.31.9e-2981392127
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdkev 92 
                     p GfrF+P+++elv++yL ++++g+++  ++ + e+++y ++P++L +  + +++++ewyf s+r++ y++g r+ r+t   +g+Wka+  +kev
  Pahal.B03058.1   8 PIGFRFQPKEDELVDYYLLPRLQGRPTVPNDSVVEANVYACHPETLINehRGAGRQDEWYFLSPRARMYSNGVRPARKTLdgRGRWKASTATKEV 102
                     89************************888799**************74224444667********************88745788***9999999 PP

             NAM  93 lsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                      +   ++  + +k +L +++g+ ++  +t+W+m e +
  Pahal.B03058.1 103 PQVvvRNGIKFCKSVLNYFEGTPKEEARTKWIMLEIT 139
                     7766688899***********************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-357167IPR003441NAC domain
PROSITE profilePS5100536.4677167IPR003441NAC domain
PfamPF023658.9E-158138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MEGDGEHPIG FRFQPKEDEL VDYYLLPRLQ GRPTVPNDSV VEANVYACHP ETLINEHRGA  60
GRQDEWYFLS PRARMYSNGV RPARKTLDGR GRWKASTATK EVPQVVVRNG IKFCKSVLNY  120
FEGTPKEEAR TKWIMLEITV PEYEIKLDRP GARNLLDEYV MCKIYVSPQH KKKCDDDEEE  180
EEEGTGSVCE EDEEACSSTQ HGQVTAEPNL SEKQAGKRPM VEQPPQRGRA APARKQARRG  240
SLGIGSTQSS CSTSNAAAPT ELYYGGGPGA HYGLQLQAPA TMQRSAGAYS GQAPATPPAG  300
AFGGRGLGQM PTLRPVIYQP FSDQTGDPFG QMATMTRPPN PAARRQCFPG SPPPRHPGTA  360
FTPQVSLQCF YDQNYRAVPQ PPGYASSSQL QRQAAFPPPQ QMQQPFFNGN ASRRVGGAAV  420
PRGSPYNGHP YLQRSSLTAA VDGRGGAANA GSGAARLNVN AEQYFVDLAT INPSLAGGCM  480
QLTPAPAPLV ESPAPAAAGA AEVQTETGAT SGLNTQDAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-17816521166NAC domain-containing protein 19
3swm_B7e-17816521166NAC domain-containing protein 19
3swm_C7e-17816521166NAC domain-containing protein 19
3swm_D7e-17816521166NAC domain-containing protein 19
3swp_A7e-17816521166NAC domain-containing protein 19
3swp_B7e-17816521166NAC domain-containing protein 19
3swp_C7e-17816521166NAC domain-containing protein 19
3swp_D7e-17816521166NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801595.10.0NAC domain-containing protein 2-like
TrEMBLA0A2S3H0530.0A0A2S3H053_9POAL; Uncharacterized protein
STRINGPavir.Ba02036.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143612024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.11e-22NAC domain containing protein 52