PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03059.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 401aa    MW: 42294.7 Da    PI: 8.8297
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03059.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.41.3e-34281212103
                     HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
    HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                     Fl+k+y++++d+++++++sw   + ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  e+         weF+++ F+kg+k+ll+
  Pahal.B03059.1  28 FLTKTYQLVDDPATDHIVSWGdGRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRKGEKQLLC 113
                     9********************5556*****************************************999.........***************** PP

                     XXXXXXXX CS
    HSF_DNA-bind  96 kikrkkse 103
                     +i+r+k++
  Pahal.B03059.1 114 EIHRRKTS 121
                     *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.5E-3617113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.1E-5724118IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-3025118IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.0E-192851IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.6E-3028118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-198092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MERMERCGSW ECDAAAQAAA QKAVPAPFLT KTYQLVDDPA TDHIVSWGDG RVSTFVVWRP  60
PEFARDILPN YFKHNNFSSF VRQLNTYGFR KVVPERWEFA NEFFRKGEKQ LLCEIHRRKT  120
SASTVSPSPP PFFSPPHFPL FHPGAPHHHQ FVGGDDGVAM AAAAHGMGVA FPHPQWRDPH  180
AAAPVATRLL ALGAPPAPSP LPSAEGAGGA SAGRAATAAV LMEENERLRR SNTALLQELA  240
HMRKLYNDII YFVQNHVRPV APSPAAAAFL QGLGLQPRKK PATPVMAAAG LNNSGGSTTS  300
SSSLTIAEEP SPPPQQQADK SGGGEAGSSG TARSAAAPTM LFGVHLSAAP AAKRPASPED  360
EHELATSPAR KPRLALEAGA DLSLSVTAAP SAASSPASIS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-221912312125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9661741e-158EU966174.1 Zea mays clone 292275 AT-HSFB4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803544.10.0heat stress transcription factor B-4c-like
SwissprotQ67U941e-149HFB4C_ORYSJ; Heat stress transcription factor B-4c
TrEMBLA0A2S3H0360.0A0A2S3H036_9POAL; Uncharacterized protein
STRINGSi030056m1e-175(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.19e-57heat shock transcription factor B4