PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03060.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 237aa    MW: 25717.2 Da    PI: 7.0094
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03060.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.5e-09158198954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++ +L++l+P       +K++ a++L +A++Y+k L
  Pahal.B03060.1 158 ARLRRERISERIRTLQRLVPGG-----TKMDTASMLDEAIHYVKFL 198
                     699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.675149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-14150212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-15156224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-6159198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.09E-6171203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MEFDLLNYSP EAQLELMNTM LQLEQLTKLD GGHHSLTAPV SPPVSPVQTH AAHCFSPPAH  60
MSATATAGYQ DQYTPPAAYA GSTVGLEHLQ VDYVLSPCAD GGAPQPAGSP SPTSSADAMR  120
EVIFHIAALQ PVEIDPEAVR PPKRRNVRIS KDPQSVAARL RRERISERIR TLQRLVPGGT  180
KMDTASMLDE AIHYVKFLKS QVQSLERAAA ATHRAAYHPA LLHAPWHQYA VPHGDM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139144RPPKRR
2158163RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9561561e-160EU956156.1 Zea mays clone 1558251 DNA binding protein mRNA, complete cds.
GenBankKJ7269741e-160KJ726974.1 Zea mays clone pUT3675 bHLH transcription factor (bHLH150) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803362.11e-174transcription factor HEC2-like
SwissprotQ9SND45e-42HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A2S3H0341e-172A0A2S3H034_9POAL; Uncharacterized protein
STRINGPavir.J21912.1.p1e-118(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.14e-41bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]