PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03129.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 220aa    MW: 23179.2 Da    PI: 8.6376
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03129.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.9e-133076354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    r+h+e+Er+RR+riN  +++Lr+l+P a      +++Ka+ L ++v+++++L
  Pahal.B03129.1 30 RSHSEAERKRRQRINAHLATLRTLVPAA-----SRMDKAALLGEVVRHVREL 76
                    68*************************9.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.6052776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-113076IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-143079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-113077No hitNo description
SuperFamilySSF474591.57E-133082IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-123382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2604.9E-5129190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MVPLGSDEAE VAMDGERSPP PAATRSGPSR SHSEAERKRR QRINAHLATL RTLVPAASRM  60
DKAALLGEVV RHVRELRGEA DAAAAGAAVA VPGEGDEVGV EEGQHCCCHG AGGERDRAAA  120
ATRRVRAWVC CADRPGLMSE LGRAVRSVSA RAVRAEIATV GGRTRSVLEL EVGGQHDGEG  180
TSSRPALQAA LRAVLLSREE LLAAECYKRQ RFSAHIARV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13540ERKRRQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9691020.0EU969102.1 Zea mays clone 326075 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799424.11e-150transcription factor bHLH30-like
TrEMBLA0A2S3H0931e-149A0A2S3H093_9POAL; Uncharacterized protein
STRINGSi033077m1e-114(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.11e-17bHLH family protein