PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03173.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 422aa    MW: 46542.1 Da    PI: 9.0269
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03173.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.31.2e-11134164333
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLee 33 
                     +++  rr+++NReAAr+sR+RKka+i++Le+
  Pahal.B03173.1 134 KVRTLRRLAQNREAARKSRLRKKAYIQQLET 164
                     567789***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-4132194IPR004827Basic-leucine zipper domain
PfamPF001708.3E-9134165IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.5E-8135176No hitNo description
SuperFamilySSF579593.69E-7136170No hitNo description
PROSITE patternPS000360139154IPR004827Basic-leucine zipper domain
PfamPF141441.8E-27221293IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MMPASSTMSK ESATSYDMAE FDQSAIFLYL DGNDQEQRQT LNIFPSQPMH VAEPIPAKGV  60
SMGMVAAMQP NGNSSPPKRH DQGGQRSPAV PPPAPTVALP NSAKETKSSL NKKEATSGGK  120
GATSGDQERV RDPKVRTLRR LAQNREAARK SRLRKKAYIQ QLETSRIRLS QLEQQVHVAR  180
VQGVFLGTGE QPSFPSAPSP AAVVFDMEYG RWVEEHSKLI FQLRATLNEH LADEQLQGFV  240
NGAMAQHEEL LNLKGAMARA DVFHLLSGVW ASPAERCFLW LGGFRPSEVI KVMLKHVEPL  300
SEGQILGIYN LQQSVQEREE ALNHSMEATQ QSISDTIAAP DVAPATFMGH MSLAMNKVAS  360
MEGFVMQADG LRQQTLHKLH HILTTRQAAR CMVAIADYFH RLRALSTLWV ARPRHEDGPV  420
L*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804472.10.0transcription factor TGAL7-like isoform X1
SwissprotQ6H4340.0TGAL7_ORYSJ; Transcription factor TGAL7
TrEMBLA0A2S3GY950.0A0A2S3GY95_9POAL; Uncharacterized protein
STRINGSi029966m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27323669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-128bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]