PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03210.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 231aa    MW: 25851.1 Da    PI: 8.5103
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03210.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1391.8e-12131186358
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                     + +r rr+ +NRe+ArrsR RK+ ++ eL   v  L + N++L +el++    ++ 
  Pahal.B03210.1 131 DERRRRRMVSNRESARRSRMRKQRQLTELWAQVVHLRGTNRRLLDELNQAMRGCSD 186
                     5679999*****************************************98877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.1E-10127182No hitNo description
SMARTSM003384.3E-15129193IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.185131182IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-10133182No hitNo description
PfamPF001704.3E-10133187IPR004827Basic-leucine zipper domain
PROSITE patternPS000360136151IPR004827Basic-leucine zipper domain
CDDcd147029.12E-15138182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MAMYQINKLK LPNSTKRKEA REGGFSLYHI DPTPTSLLKI STEHTSEAAM LHQHHYHGGV  60
ATANLHCLTS PNPAFHAHCH SNMIAMPSTP FHFPPSTFEP IHEAPAVVGN SPAGSGSADD  120
AYGGRMVMAE DERRRRRMVS NRESARRSRM RKQRQLTELW AQVVHLRGTN RRLLDELNQA  180
MRGCSDMCCE NAQLEKEKAE LSTKLERLMQ AQNTTTPSFS SEPRDDTATE *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145152RRSRMRKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799413.11e-135bZIP transcription factor 2-like
TrEMBLA0A2T8KQW71e-133A0A2T8KQW7_9POAL; Uncharacterized protein
STRINGPavir.Bb02514.1.p1e-128(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118635126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.15e-11basic leucine-zipper 42