PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03269.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YC
Protein Properties Length: 200aa    MW: 21179.1 Da    PI: 5.2621
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03269.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC169.83.2e-53571601101
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql++fw++q   ie +tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+ksdiaaa++rt++fdfl
  Pahal.B03269.1  57 QLQMFWAEQyreIEATTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIAAAIARTEVFDFL 151
                     89******99999********************************************************************************** PP

           NF-YC  93 vdivprdel 101
                     vdivprd+ 
  Pahal.B03269.1 152 VDIVPRDDA 160
                     ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.17E-3056151IPR009072Histone-fold
PfamPF008083.6E-2179142IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.1E-3680157IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MDPTKSSTPP PPPVMGAPVA YPPAAYPPAA AAGAYAPQLY APPAAAAAQQ AAAAQQQLQM  60
FWAEQYREIE ATTDFKNHNL PLARIKKIMK ADEDVRMIAA EAPVVFARAC EMFILELTHR  120
GWAHAEENKR RTLQKSDIAA AIARTEVFDF LVDIVPRDDA KDADAAAAAA AAAAAAGIPR  180
PAAGVPATDP LAYYYVPQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-5665157395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129135RRTLQKS
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1004490.0FP100449.1 Phyllostachys edulis cDNA clone: bphyst023f20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801912.11e-138nuclear transcription factor Y subunit C-6-like
SwissprotQ9XE332e-76NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6
TrEMBLA0A2S3H0Q81e-136A0A2S3H0Q8_9POAL; Uncharacterized protein
TrEMBLA0A2T7ETQ01e-136A0A2T7ETQ0_9POAL; Uncharacterized protein
STRINGOMERI09G10750.14e-92(Oryza meridionalis)
STRINGONIVA09G14690.14e-92(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38563676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.35e-57nuclear factor Y, subunit C3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]