PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03278.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 578aa    MW: 61531.1 Da    PI: 6.768
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03278.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.13.7e-33384442159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  Pahal.B03278.1 384 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHE 442
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-37369444IPR003657WRKY domain
SuperFamilySSF1182905.62E-29376444IPR003657WRKY domain
PROSITE profilePS5081137.539379444IPR003657WRKY domain
SMARTSM007744.0E-38384443IPR003657WRKY domain
PfamPF031062.2E-25385442IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MAGTGNHGSL MEEWLPPPTP SPRTLMSSFL NEEFSSGPFS NLFSEHGTNK PHDQCEKSRE  60
LVSLSEEVPA QAVKDRFQKG FSLEPNLFSA TQKSNSHGGL AERRAARAGF SVPKIDTSRV  120
GSSAVIRSPV SIPPGLSPTT LLESPVFLYN KMAQPSPTTG TLPFLMATSD KSTISPAAKI  180
TEDSTFDNDV FSFQPHLGSK QPSFSTAEKN YGTYHQNQSL SNIHQQESSL QSSFPAVKDN  240
TNATIVKAKA SDSMFDNSHY SADRKQDDGT NQNVQGEGVE ARTAACVPVS THGDASLMGS  300
QDAVDVSSTL SNEEDERATH GTVSLECEGD EDETESKRRK LDALGTSTIT TAVATSTIDM  360
GAAASRAVRE PRVVVQTTSE VDILDDGYRW RKYGQKVVKG NPNPRSYYKC THPGCSVRKH  420
VERASHDLKS VITTYEGKHN HEVPAAKNSG QAGSSSAGTT SASQGSSSHR SHEPAQASFA  480
HFGASPPFGS FGHLGPATGS FRFGMVPPGM AIPMPSLGSL APTKMVGNSP AMQGYPGLMM  540
PAEPKAEPVS QPGFPTANAA PSAYQQMMSR PPFGHQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-38375445878Probable WRKY transcription factor 4
2lex_A8e-38375445878Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802032.10.0LOW QUALITY PROTEIN: probable WRKY transcription factor 2
TrEMBLA0A2S3H0U00.0A0A2S3H0U0_9POAL; Uncharacterized protein
STRINGPavir.J40119.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123382233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.12e-63WRKY DNA-binding protein 2