PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03330.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 497aa    MW: 55168.1 Da    PI: 7.3172
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03330.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.83.5e-11188231141
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 
                     e++ k  rr+++NReAAr+sR+RKka+i++Le    + ++Le+e
  Pahal.B03330.1 188 ERDPKTLRRLAQNREAARKSRLRKKAYIQQLESsriRLAQLEQE 231
                     6777999************************9633355555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.8E-8184236No hitNo description
SMARTSM003385.6E-8188253IPR004827Basic-leucine zipper domain
PfamPF001703.3E-8189231IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.082190232IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.46E-7193234No hitNo description
PROSITE patternPS000360195210IPR004827Basic-leucine zipper domain
PfamPF141442.3E-28288362IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MASGGSSVRE QQQEMNISFG MMNHHHGHHH QQPPSSSSSS SMHAAAASFM SGKEASGAYD  60
HLGELDQALF MYLDHGSGHG ATHQEQRQTL NIFPSQPMHV EPSPKGEISL VLSPAPVGSK  120
QPRSPDHHHH QQAAMEELAG SRRLQQEHHH LQHQPFPAAG AEPAAPGMIK DVKPLTKKDH  180
RRGTSTSERD PKTLRRLAQN REAARKSRLR KKAYIQQLES SRIRLAQLEQ ELHTARAQGV  240
FFPNSGLLAD QGVAGKGVPI GGIDGLSSEA AMFDVEYGRW QEEHYRLMYE LRAALQQHLP  300
EGELQMYVES CLAHHDEMMG IKEGAIKGDV FHLISGVWRS PAERCFLWLG GFRPSEVIKM  360
LLSHVEPLTE QQIVGVYGLQ QSALETEEAL SQGLDALYQS LSDTVVSDAL SCPSNVANYM  420
GQMAAAMNKL STLEGFVRQA ESLRQQTLHR LHQILTTRQM ARSLLAVSDY FHRLRTLSSL  480
WVTRPRAPQE QQQGHS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9669280.0EU966928.1 Zea mays clone 298194 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800643.10.0transcription factor TGA2.1-like
SwissprotQ52MZ21e-172TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A2S3H0U70.0A0A2S3H0U7_9POAL; Uncharacterized protein
STRINGGRMZM2G006578_P030.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78763543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-146bZIP family protein