PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03340.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 596aa    MW: 62562.2 Da    PI: 9.7636
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03340.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.71.7e-102777446
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqk 46
                     W t E++ll++av+++G+ +W+++a +++         g+t+ +c++r++ 
   Pahal.B03340.1 27 WGTLEELLLACAVTRHGTASWDSVAMEVQtrsplaarPGLTPHSCRLRFRL 77
                     9999********************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-42278IPR009057Homeodomain-like
SMARTSM007173.0E-42381IPR001005SANT/Myb domain
PfamPF002498.4E-92776IPR001005SANT/Myb domain
CDDcd001670.001232759No hitNo description
PROSITE profilePS500906.0862779IPR017877Myb-like domain
SuperFamilySSF473701.28E-6257344IPR001487Bromodomain
PfamPF004392.5E-5269338IPR001487Bromodomain
Gene3DG3DSA:1.20.920.105.3E-6272351IPR001487Bromodomain
Gene3DG3DSA:1.20.920.105.3E-6407424IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MANGSDGAGV SPESEATAAA EKGGEIWGTL EELLLACAVT RHGTASWDSV AMEVQTRSPL  60
AARPGLTPHS CRLRFRLLHR RFSTAGSGEE DDPDASAAEG WVDELRRLRV AELRRDVERC  120
DLSIGTLQSK VKRLREERER SVSGEEKPDE ANGNDRLSGE EPGRSCRESN STDLKPPTHP  180
GHQGGGAKEE EVAKQEASGE SAAASKESSD VRSSASLCRR RRGKAEEEEE EEEASALGPP  240
TAGSPPLAAL LDAVAAKLGS VLQRLHEHEG EEAGAYRGTI RRHVDLETVR RRLDTSAGSR  300
EEDDDHYPAH ELYRDLLLLC TNAVVFFPRS TAEHAAAAEA RALVTGHASA PAKQDRAAAP  360
APAPAGADIV GSLIEKGKPL IVCRKRSSIA KAAAAARKEE SAAKAEPEPE TEPEPEPEPA  420
EEEESEDEKK AAAAAVATKD KARGLRTKKG RGGAARNPAS LGRNPAKGAN DDADTTTTDG  480
AKKGGKKGAG GAAAGGPAKK RNAVDFLKRL NQSPSRKRGS PLGTTRKRSA SAAATAAERQ  540
NTTTRKRGAG RKEGTGRGGS RRGGRGAGTK RGVGRPLKRG SAPATPPASK RAKTK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354230.10.0uncharacterized protein LOC100277965
TrEMBLA0A2S3H0V70.0A0A2S3H0V7_9POAL; Uncharacterized protein
STRINGPavir.Ba01707.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.12e-10DNA-binding bromodomain-containing protein