PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03437.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 253aa    MW: 27789.3 Da    PI: 11.0762
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03437.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM123.32.2e-38111361128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     lppGfrFhPtdeelvv+yL++kv +++l++  vi+ v d+ +++PwdLp    a+e e yfFs r+  + t  r++r + sgyWk tgkdk+v+ 
  Pahal.B03437.1  11 LPPGFRFHPTDEELVVQYLRRKVLARPLPA-AVIPVVhDVARLDPWDLP---GASEGEGYFFSLRRAPA-T-GRRRR-AGSGYWKVTGKDKPVFL 98 
                     79****************************.8899998***********...3456799****997754.3.46666.589************** PP

             NAM  95 k....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +    ++ lvg+k+ L+f++ + +++++t Wvmheyrl
  Pahal.B03437.1  99 QcggrRQLLVGVKTALAFHRSEPSSSSRTGWVMHEYRL 136
                     987655566***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-457170IPR003441NAC domain
PROSITE profilePS5100544.80311170IPR003441NAC domain
PfamPF023651.4E-2412136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MERPAQAPSQ LPPGFRFHPT DEELVVQYLR RKVLARPLPA AVIPVVHDVA RLDPWDLPGA  60
SEGEGYFFSL RRAPATGRRR RAGSGYWKVT GKDKPVFLQC GGRRQLLVGV KTALAFHRSE  120
PSSSSRTGWV MHEYRLAVPG GVAMAEQRKN ANHARVVEPG EWVVCRVSLK NRPRRSRPNR  180
DGDSKTPGNR TSIAHRAAPL QHREGDGRQP PVSPQPSSSS CVTGVTDISD QDEVSSSSIR  240
IRDAPADSQR EA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-321117017165NO APICAL MERISTEM PROTEIN
1ut4_B8e-321117017165NO APICAL MERISTEM PROTEIN
1ut7_A8e-321117017165NO APICAL MERISTEM PROTEIN
1ut7_B8e-321117017165NO APICAL MERISTEM PROTEIN
3swm_A1e-311117020168NAC domain-containing protein 19
3swm_B1e-311117020168NAC domain-containing protein 19
3swm_C1e-311117020168NAC domain-containing protein 19
3swm_D1e-311117020168NAC domain-containing protein 19
3swp_A1e-311117020168NAC domain-containing protein 19
3swp_B1e-311117020168NAC domain-containing protein 19
3swp_C1e-311117020168NAC domain-containing protein 19
3swp_D1e-311117020168NAC domain-containing protein 19
4dul_A8e-321117017165NAC domain-containing protein 19
4dul_B8e-321117017165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0625331e-150BT062533.1 Zea mays full-length cDNA clone ZM_BFb0310M02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800656.10.0NAC domain-containing protein 83-like
SwissprotO227988e-49NAC41_ARATH; NAC domain-containing protein 41
TrEMBLA0A2S3H1650.0A0A2S3H165_9POAL; Uncharacterized protein
STRINGPavir.J11699.1.p1e-148(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128052735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.18e-45NAC domain containing protein 41
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]