PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B03444.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 151aa MW: 17650.3 Da PI: 10.1055

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B03444.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.3	1.3e-18	4	85	9	90
FAR1 9 evGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 + GF+vrk +++k+k +g++ + ++vC +eg+r+++k++ + ++ +rae rt+C+ ++ + +++ +++++v++l leHnH l+ Pahal.B03444.1 4 QKGFEVRKMYTNKRKSDGKVRSCRYVCANEGHRKKDKRD-HLTKYPRAEIRTDCQVRMGLIMDReKETYKVADLILEHNHMLQ 85 57********************************999.9999**********9888777*************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-14	4	84	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
LWGQKGFEVR KMYTNKRKSD GKVRSCRYVC ANEGHRKKDK RDHLTKYPRA EIRTDCQVRM 60 GLIMDREKET YKVADLILEH NHMLQLPQTS HLMVSQRKIS ELQGFEIETA DDAGIGPKAA 120 HELAYTLRDH KNYLRAKRQR EMAYGQAGSM L

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB108421	1e-129	AB108421.1 Oryza sativa Japonica Group transposon AnacB14 DNA, complete sequence.
GenBank	AC077693	1e-129	AC077693.19 Oryza sativa chromosome 10 BAC OSJNBa0095C07 genomic sequence, complete sequence.
GenBank	AP014966	1e-129	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	1e-129	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015694622.1	2e-89	PREDICTED: LOW QUALITY PROTEIN: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025876512.1	2e-88	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_025876513.1	2e-88	protein FAR1-RELATED SEQUENCE 5-like isoform X2
Refseq	XP_025877975.1	2e-87	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2T8KVK9	1e-101	A0A2T8KVK9_9POAL; Uncharacterized protein
STRING	OS10T0571900-00	5e-92	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-13	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pahal.B03444.1